barSeed - Barley Seed Development Database

Probe CUST_16169_PI390587928

Source Contig U35_41863

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16169_PI390587928	Hv_44K_v2	CACCCCAAATTTCTGATATTGAATTAGAGGAGATTGCTAAGATGGGCAATGCTGGCGATC	465	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68734.2	2171	7e-23	13 - 72	98	59 / 60	plus	ABC08500 ABC12666 ABC17636 ABC37701
MLOC	MLOC_68734.1	2386	7e-23	14 - 73	98	59 / 60	plus	ABC08500 ABC12666 ABC17636 ABC37701
JLOC1	JLOC1_45507.1	2580	4e-23	14 - 73	98	59 / 60	plus
Harvest21	ABC37123	528	3e-25	466 - 525	100	60 / 60	plus
Harvest35	U35_41863	528	3e-25	466 - 525	100	60 / 60	plus

Contig Sequence (528 bp)

>U35_41863 528 Hv_44K_v2
GCGAAGATGAAAAGGAAATGCTTTCTGAGGCAAGGGCTCGCTTGGCTAACACCAGGGGTA
AAAAGGCAAAACGGAAGGCAAGAGAAAAACAACTTGAAGAGGCAAGGCGGCTTGCATCAC
TGCAAAAAAGGAGAGAACTGAAGGCAGCTGGTATTGATAACCGGCACAAGAAAAGGAAGA
GAAAGGGAATTGACTATAATGCCGAGATCCCTTTTGAAAAGAGACCCCCTCCAGGCTTTT
ATGATACAGTGGGTGAGGACAGGCCACTTGAGCATGTGCAGTTTCCAACTACCATTGAGG
AGCTCGAAGGAAGGAGAAGAGTGGATGTAGAGGCTCAGTTAAGAAAGCAAGACATTGCAN
AGAACAAGATTCTGCAGAGGCAGGATGCCCCTGCCGCAATAATGCAAGCAAATAAACTCA
ATGACCCAGAAGCTGTCACAAGAAAGTCCAAACTAATGCTTCCACCACCCCAAATTTCTG
ATATTGAATTAGAGGAGATTGCTAAGATGGGCAATGCTGGCGATCCTG

Homology of Contig U35_41863 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g28090.1	973	2e-90	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi4g07110.1	983	3e-94
Arabidopsis v10	AT1G09770.1	844	1e-79	\| Symbols: ATCDC5, CDC5, ATMYBCDC5 \| cell division cycle 5 \| chr1:3162002-3165122 FORWARD LENGTH=844