barSeed - Barley Seed Development Database

Probe CUST_16135_PI390587928

Source Contig U35_27587

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16135_PI390587928	Hv_44K_v2	CTTGTTCTTTAGCAATTCATGTACTCTTTGCTGTTGAAGTTATCGTCGATCGCTTAAAAA	440	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60891.3	3324	7e-23	1295 - 1351	100	57 / 57	minus	ABC21004 ABC24430
MLOC	MLOC_60891.1	3613	7e-23	1471 - 1527	100	57 / 57	minus	ABC21004 ABC24430
MLOC	MLOC_60891.2	1905	7e-23	1299 - 1355	100	57 / 57	minus	ABC21004
JLOC1	JLOC1_39743.1	3447	4e-23	1338 - 1394	100	57 / 57	minus
Harvest21	ABC21004	512	3e-25	13 - 72	100	60 / 60	minus	ABC21004
Harvest35	U35_27587	512	3e-25	441 - 500	100	60 / 60	plus

Contig Sequence (512 bp)

>U35_27587 512 Hv_44K_v2
CCCCGGCTCCTGTTCAGGTTCAGATGCAGCTGGGCATCTACGGGCCCCGGGCTCCGGTGC
GCGGGTACCCCGTCACGATGTCCCCCGTGCGGTCCGTCGTCGCGCCGCACGTCGGCGAGC
AGTGCCATGCGTTCGGCGGAGAACCCGTCGTGGCCCAGCAATACTACGGGTACGGGTACG
GGGAAGGAGCGTACGGCGCTGGTACTAGCAACAACGGAGGAGCCTGTGCCGACGAGGAGA
GCTCGTCCAACGGCGTGCCGGTGCCGGCGGTGGGCACGGAGGAGCCGGAGCCAGCGGAAG
AAGAATCGCAGGACAAGCCCGTCCAATCTGGCTAGCCGCGGGGGCGGCGCGCGTTAGCTT
CCGCGTCCTGCGCGTACTGTAATAATTTGCCGTGTCGATCCGGCGAAAGTTTGTGTGTGC
TACTGGTTACCTAATGTGGGCTTGTTCTTTAGCAATTCATGTACTCTTTGCTGTTGAAGT
TATCGTCGATCGCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_27587 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None