barSeed - Barley Seed Development Database

Probe CUST_16099_PI390587928

Source Contig U35_45130

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16099_PI390587928	Hv_44K_v2	AGCAATTGGAGTTATTATGGATCTCCCTCCAGCTATACTTGGCATGACAGTCTTGGCATG	385	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356045	1680	2e-24	1173 - 1232	100	60 / 60	plus	None
MLOC	MLOC_21103.1	1860	2e-24	777 - 836	100	60 / 60	plus	ABC12425 ABC18237 ABC38132 ABC47436
JLOC1	JLOC1_14642.1	1450	8e-25	733 - 792	100	60 / 60	plus
Harvest21	ABC43591	469	3e-25	386 - 445	100	60 / 60	plus
Harvest35	U35_45130	469	3e-25	386 - 445	100	60 / 60	plus

Contig Sequence (469 bp)

>U35_45130 469 Hv_44K_v2
CTAGTTTGTGGACGGTGCTCACCAAGGTAACAAGAGTTTGGGATTGGCCTGTGACATTTC
TTTTGAAGCTCACGATACCGTCAACGCTTCCTTCTGAATGGAACAAATTTTATGTCTGTG
CGAACATCTGTCTATGCCCTCTCATACTGCTATATTCTTTTAGCTCATTCATTCCATTGG
ATAGCCGAATAGTATTTCTTCTCCCTCAAATCCGCTTCCCCCTCTGGTCTGTTGTGCTTC
TGGTTAGCTTTTGTTTGGCTCTATCCCACTTCCGTTTTGAGAAAGAATCACCAGAAACAG
AAAGCATTGCAAGTACCCTCATATCGTTTGTAATGAGCGTCTTCTGGATCTCAACCATGG
CCGGAGAGCTCCTGAACTGCCTGGCAGCAATTGGAGTTATTATGGATCTCCCTCCAGCTA
TACTTGGCATGACAGTCTTGGCATGGGGGAATTCTGTTGGTGATCTTGT

Homology of Contig U35_45130 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	AT1G08960.1	546	4e-55	\| Symbols: CAX11, ATCAX11 \| cation exchanger 11 \| chr1:2879698-2881877 FORWARD LENGTH=546