barSeed - Barley Seed Development Database

Probe CUST_16041_PI390587928

Source Contig U35_45168

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16041_PI390587928	Hv_44K_v2	CGAGTATCTTGGTGTTCAGAGTTCTCGTTTTAAGTTCAGCAATGGTGTAATAATAACTAA	500	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19482.2	565	2e-24	472 - 531	100	60 / 60	plus	ABC02408
MLOC	MLOC_19482.1	1002	2e-24	192 - 251	100	60 / 60	minus	ABC02405 ABC02406 ABC02408
JLOC1	JLOC1_13502.1	956	8e-25	748 - 807	100	60 / 60	plus
Harvest21	ABC02410	813	3e-25	739 - 798	100	60 / 60	plus
Harvest21	ABC02408	876	3e-25	771 - 830	100	60 / 60	plus	ABC02408
Harvest35	U35_45168	577	3e-25	501 - 560	100	60 / 60	plus
Harvest35	U35_792	876	3e-25	771 - 830	100	60 / 60	plus

Contig Sequence (577 bp)

>U35_45168 577 Hv_44K_v2
AAGGGGCAGGGCGCTGCGGAGGCCACGAAGCAGAAGGCCGGCGAGGCGGGGCAGAAGACG
TCCGAGACGGCGCAGGCCGCCAAGGACCGGGCCGCCGAGGGCAAGGACGAGGCCGGCAGC
TACCTCGGCCGCACGGCCGAGGCCGCCAAGCAGAAGGCCTCCGAGGCGACGGGGTACACG
CAGGACAGGGCCTCCGACGCGGCGCAGTACACCAAGGACTCCGCCGTCGCCGGCAAGGAC
AAGACCGGCAGCGTCCTCGGTCAGGCCGGCGAGCAGGTGAAGAACGCGGTGGTCGGCGCT
AAGGACGCGGTGGCGAACACGCTGGGGATGGGGGGAGATAACACCACCGAGACGGTCACC
AAGAGTCGTCACTAGATATACCTCTCGCGGTTGCATATATATGCTTTTATTTCCTTCAGT
TCCTGGAGCTCCAGATTCCTGTGGCGTGTCCGAGTCTGTCTGTGTGTGTCACTCATGGTC
GGGTGAGGATGTCTCACTGACGAGTATCTTGGTGTTCAGAGTTCTCGTTTTAAGTTCAGC
AATGGTGTAATAATAACTAATAACGATAATATAGCTA

Homology of Contig U35_45168 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None