barSeed - Barley Seed Development Database

Probe CUST_16039_PI390587928

Source Contig U35_33190

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16039_PI390587928	Hv_44K_v2	AGCCATTCGCCGTCGCTGGTACCCTGGTAAATTCTCTCGCAACAGAAAGCAACGCTGTTA	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73778.1	1586	3e-22	92 - 150	98	58 / 59	minus	ABC14874
MLOC	MLOC_73778.2	1576	3e-22	92 - 150	98	58 / 59	minus	ABC14874
MLOC	MLOC_73778.3	1414	3e-21	10 - 66	98	56 / 57	minus	ABC14874
JLOC1	JLOC1_49133.2	1621	1e-22	1437 - 1495	98	58 / 59	plus
JLOC1	JLOC1_49133.1	1611	1e-22	1427 - 1485	98	58 / 59	plus
Harvest35	U35_33190	408	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (408 bp)

>U35_33190 408 Hv_44K_v2
TAACAGCGTTGCTTTCTGTTGCGAGAGAATTTACCAGGGTACCAGCGACGGCGAATGGCT
GCAAAAAGGAAAGGAGTGGAATGTACAGCTAGTAGGTACAGAAGGGGCACACGGCAAAGG
AACTCTCAGCAGGATATGCTTGCTACTCTGGGAGGAAGGGTAGCCTGGTGACACCGCTCT
GCGTATAGTCCATGCCGTCGGAGCTGCCATCTGAATCTGTGAGCCCGGGTGCGGTCTCGG
AGGTCTCTTGCTCCGAGGCGGCAACTTCTTCCCTGTCCGCGAACTGCGGAAGGATCCGTA
GGCACGCGTTCGGCTCCTGTCCCGTGACTTCCCACTTGAGGTTGAACCTTTCGACGAGGT
TCACTTGGGAGGAGATGATGGTCGATGGTCTGGGCAGGAGCTGCATGC

Homology of Contig U35_33190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None