- Probe CUST_16006_PI390587928
- Source Contig U35_4105
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_16006_PI390587928 | Hv_44K_v2 | TTCTCGGCAAAGCTTGTTACTTCCATAGCTGGCTAGCGAGCTCACACGAACCGGCGGTGT | 98 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_64948.1 | 2031 | 2e-24 | 52 - 111 | 100 | 60 / 60 | plus | ABC06409 ABC15518 ABC18569 |
MLOC | MLOC_64949.1 | 869 | 2e-24 | 585 - 644 | 100 | 60 / 60 | plus | None |
JLOC1 | JLOC1_42691.1 | 2609 | 8e-25 | 419 - 478 | 100 | 60 / 60 | plus | |
Harvest21 | ABC15927 | 539 | 3e-25 | 22 - 81 | 100 | 60 / 60 | plus | |
Harvest35 | U35_4105 | 617 | 3e-25 | 99 - 158 | 100 | 60 / 60 | plus | |
Harvest35 | U35_31506 | 438 | 1e-23 | 49 - 108 | 98 | 59 / 60 | plus |
Contig Sequence (617 bp)
>U35_4105 617 Hv_44K_v2 CTATTGGCCTCCACGTATAAATCCCCGCGCGCCGCGCCGCGAACTCCCACACACCCAAGC TATACTAGCCAGCGCGACCACCTCGCAGAGCCGTGGCATTCTCGGCAAAGCTTGTTACTT CCATAGCTGGCTAGCGAGCTCACACGAACCGGCGGTGTGGAGAACCGTGGTAGCTAGGGG TACGGTTCCATTCACGAGGTACGTGCGAGCGAGCGAGCGTCCTTGTGGAGGCGGAGGCGG AGCCATGGACAGGGATCTGTTCAGGACGGTGAAGCAGGGGACGCGGAACCAGGCTAGGCT GCTGTACCACCGGCTGGTGTGCCGCCTGCCGCACCTCCTCGCCGTCACGCTGCTCCTCGT AGTGGCCCCGCCGTTGGTGTCCACGCTGTCGATCGCCGCGCTCTGGAGCGAGGCGCGCGC CAACGCGGCCGTGCTGGTGGCCGCGTGCGCGGGCTGCGTGGCCGCGGCGTACGCCTACGC CGTGTCGCGGCCGCGGCCCGTGTACCTGGTGGACATGGCCGGGTACAAGCCCGGGCCGGC GCACGAGGCGACGCGCGCGCAGGCCATCCGCCAGTTCGGGCTCGCCGGCGGGTTCGACGA CGAGAGCATGTCGTTCC
Homology of Contig U35_4105 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |