barSeed - Barley Seed Development Database

Probe CUST_1593_PI390587928

Source Contig U35_30206

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1593_PI390587928	Hv_44K_v2	TCGGGAAAGCTGGTTATCACGGGCCTGTATTGATTCGATTATGCGTGATACTGATATATT	327	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366322	2002	7e-23	1895 - 1954	98	59 / 60	plus	ABC04006 ABC41313
MLOC	MLOC_16363.1	1417	7e-23	1283 - 1342	98	59 / 60	plus	ABC04006
JLOC1	JLOC1_11263.1	1672	4e-23	1283 - 1342	98	59 / 60	plus
Harvest21	ABC29998	387	3e-25	328 - 387	100	60 / 60	plus
Harvest21	ABC04006	2006	1e-23	1879 - 1938	98	59 / 60	plus	ABC04006
Harvest35	U35_30206	387	3e-25	328 - 387	100	60 / 60	plus
Harvest35	U35_15913	2006	1e-23	1879 - 1938	98	59 / 60	plus
Harvest35	U35_4842	615	1e-23	490 - 549	98	59 / 60	plus

Contig Sequence (387 bp)

>U35_30206 387 Hv_44K_v2
GACAACATTAACTGGCAGTTTACAAGTCCCCATTCTTTAGATGTCCCTAGCAAGGATATC
TAATATTCTGAAAAAATAATAATTGCAAGCATACCTAATTCTTAGTCTGATTTATTTTCA
GGAGGACTATGACGATATTGTGACTGGGTGGAACGCGAAACTTCATAGGAGCTCTGCTGG
TGAGCATAGGTGGGGGCTGTGCATTGGGACCAAATGATGGCCCATATCTGGGGGTGTCTG
CAAGCAAATAAAGCGGCTTCATTTCATGTGGCCTTTCTCATAATTTGGTTTTGCAATTGA
TATTTACCTATCCTATTTCTCGGTGATTCGGGAAAGCTGGTTATCACGGGCCTGTATTGA
TTCGATTATGCGTGATACTGATATATT

Homology of Contig U35_30206 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None