barSeed - Barley Seed Development Database

Probe CUST_15913_PI390587928

Source Contig U35_91

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15913_PI390587928	Hv_44K_v2	CCATGTGCACTGTTGATATATGAATCATACACTCAGCTATGCCTGCGTGCGTCGTTATTC	677	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71436.2	732	2e-24	669 - 728	100	60 / 60	plus	ABC00717 ABC00824 ABC00845 ABC00871 ABC00959 ABC00972 ABC40733 ABC50827 ABC53018
MLOC	MLOC_71436.1	1029	2e-24	65 - 124	100	60 / 60	minus	ABC00717 ABC00824 ABC00845 ABC00871 ABC00959 ABC00972 ABC40733 ABC50827 ABC53018
JLOC1	JLOC1_47478.1	1534	8e-25	62 - 121	100	60 / 60	minus
Harvest21	ABC00972	756	1e-24	674 - 732	100	59 / 59	plus	ABC00972
Harvest35	U35_91	760	3e-25	678 - 737	100	60 / 60	plus

Contig Sequence (760 bp)

>U35_91 760 Hv_44K_v2
CACCGGTAATCACTTAGCAAATCTAGCCATCTCATCATCTCCAGCTGAGCTCGGCTGCGC
TACTATTCCAAACTCATTAGGGATGGCTCGCGCTGCAGCTAGTCAGCTCGTGCTGGTCGC
CCTGGTGGCCGCCATGCTCCTCGTAGCCGCCGACGCGGCCATCTCCTGCGGTCAGGTGAG
CTCTGCCTTGAGCCCCTGCATCTCCTATGCCCGCGGCAACGGCGCCAAACCGCCTGCGGC
CTGCTGCAGCGGCGTCAAGAGACTGGCCGGCGCTGCCCAGAGCACCGCTGACAAACAAGC
GGCGTGCAAGTGCATCAAGAGCGCTGCTGGTGGGCTAAACGCTGGCAAGGCCGCCGGCAT
CCCCTCCATGTGCGGCGTCAGCGTCCCCTACGCCATCAGCGCTTCCGTCGACTGCTCTAA
GATTCGCTGATCAACCACTTGCTGCCTATAGCCCCAGCAATCGACGCTGAGTACGTTGAG
GTCACACATACATACATATATATGAATAAATGCTCTCATATTATCTTCATGTGGGATATA
TATAGAGAGAGACAGAGAGAGAGAGGACGGAGTATCTATGTTGAGCCAGTTCTGCATGGC
CGGCCATACTGTTCTATCCATGTTTGGTTGTTCCTTCACTCCCTTTGAGGGGACCCAAGA
GTTTATTGTATTTTGTACCATGTGCACTGTTGATATATGAATCATACACTCAGCTATGCC
TGCGTGCGTCGTTATTCAAAAAAAAAAAAAAAAAAAAAGG

Homology of Contig U35_91 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None