barSeed - Barley Seed Development Database

Probe CUST_15907_PI390587928

Source Contig U35_94

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15907_PI390587928	Hv_44K_v2	TGATTACAAAGCAGCCCTACAGCAATGTGTGGGCGATTGTTTGTAGAGTTGTTGTTTTTT	1004	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2539.1	1209	2e-24	1077 - 1136	100	60 / 60	plus	ABC02951 ABC02952 ABC02957 ABC02958
JLOC1	JLOC1_1514.1	1207	8e-25	1075 - 1134	100	60 / 60	plus
Harvest35	U35_94	1112	3e-25	1005 - 1064	100	60 / 60	plus

Contig Sequence (1112 bp)

>U35_94 1112 Hv_44K_v2
CAAAGCACTCCACTTTGGAGCTCAATTGATTCCAAGAAGCTCTCTAGTCCACCAGGACAT
CCACCATGGCACAGCGCTTTCTGGCTGTGCTCGCCGTCGCCCTGGCGCTCTCGCAGGTCG
CCTCAGCTAAGTCCTGGCTCGATAAAAGGTTCAACACCGACGGCACCGTCCGCACCGGAT
ACGACGCCTCGGGCCAGCAGGTGGTTATGCTCAACCTCAACCAGCAATCCGGCGCCGCCG
GATTCAACTCCAAGCAGCAGTACCTCTACGGCGAGTTCAGCATCCAGATGAAGCTCATCC
CGGGAAACTCCGCCGGCACCGTCTCCTGCTTCTACCTTTCTTCCGGTGACGACGAGTGGC
GCGACGAGATCGACATGGAGTTCATGGGCAACTCCAGCGGCCACCCGGTGGTGCTCAACA
CCAACGTGTGGGCCAACGGCGACGGCAAGAAGGAGCACCAGTTCGACCTCTGGTTCGACC
CAGCCGCAGACTACCACACCTACACCATCATCTGGAACCCGGAGAACATCCTCTTCAAGG
TGGACAACCTCTTCATCCGATCCTTCAAGCGCTTCGCCGGCCTCCCTTACCCTACCTCCA
AGCCCATGAGGCTGCACGCCACGCTCTGGGACGGCAGCTACTGGGCGACCGAGAAGGGCA
AGATCCCGATCAACTGGTCCAACGCGCCATTCGTCGTCTCCTACCGCAACTACTACGCCA
ACGCCTGCGTCAGCGGCGGCGCGTGCCATGCCGGCAGCGACAGGTGGATGAGGAAGCAGC
TCGACGGCGACGAATGGGGCACCGTGAAGTGGGCGGAGCGCAGTTACATGCGCTACAACT
ACTGCGAGGATGGGTACAGGTTCCCGCAGGGGCTTCCCGCCGAGTGCAACCGCTACTGAT
CCTAGCTCTGATCCATCCACACCGGCCGTGCATCCAGTGTTGACATTGATACTACCTTTT
TCTTGGATACAGTACATGATTCTTGTTCTTCTTTTGTGAATTTGTGATTACAAAGCAGCC
CTACAGCAATGTGTGGGCGATTGTTTGTAGAGTTGTTGTTTTTTTCCTAAAGAAAGAAGC
ATGTAAATTTTATTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_94 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g13920.1	291	3e-114	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi3g18590.1	281	3e-121
Arabidopsis v10	AT5G57550.1	284	1e-81	\| Symbols: XTR3, XTH25 \| xyloglucan endotransglucosylase/hydrolase 25 \| chr5:23305055-23306384 REVERSE LENGTH=284