barSeed - Barley Seed Development Database

Probe CUST_15799_PI390587928

Source Contig U35_13770

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15799_PI390587928	Hv_44K_v2	ACAGCAGGGCAAGCATAGTAGAGACGCCCATGGTAGCAACGACACCAAGGACTACCTCGA	37	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61081.1	1456	2e-24	82 - 141	100	60 / 60	plus	ABC01222 ABC39980
JLOC1	JLOC1_39884.1	1381	8e-25	110 - 169	100	60 / 60	plus
Harvest21	ABC39979	292	3e-25	38 - 97	100	60 / 60	plus
Harvest21	ABC30123	516	3e-25	64 - 123	100	60 / 60	plus
Harvest35	U35_13770	445	3e-25	38 - 97	100	60 / 60	plus

Contig Sequence (445 bp)

>U35_13770 445 Hv_44K_v2
GAGCTTAGAGGTCGATCCATATCGACATGGCCGCTGCACAGCAGGGCAAGCATAGTAGAG
ACGCCCATGGTAGCAACGACACCAAGGACTACCTCGACCCTCCCGCGGTCCGGCTGTTCG
ACGCCGGTGAGCTGGGCCAGTGGTCCCTGTACCGCGCCATCATCGCCGAGTTCACCGCCA
GCCTGCTCTTCGTCTACGTCTCCATCGCCACCGTGATCGGCCACAAGCGCCAGACGGACG
CGGACGCGTGCAGCGGCGCCGGCGTGCTGGGCATCGCGTGGGCCTTCGGCGGCATGATCG
CCGTCCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCCACGTCAACCCCGCCGTGACGT
TCGGGCTGCTGCTGGCGAGGAAGCTGTCGCTCCCCCGCGCCTTGCTCTACACGTCGGCGC
AGTGCCTCGGCGCCATCTGCGGCGC

Homology of Contig U35_13770 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g26690.2	286	3e-60	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi3g18460.1	296	4e-61
Arabidopsis v10	AT3G54820.1	286	1e-58	\| Symbols: PIP2D, PIP2;5 \| plasma membrane intrinsic protein 2;5 \| chr3:20302117-20303738 FORWARD LENGTH=286