barSeed - Barley Seed Development Database

Probe CUST_15795_PI390587928

Source Contig U35_49701

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15795_PI390587928	Hv_44K_v2	TATTCTTCTAGTGAAACCTGGATTGCCGTACTTGGATATCATCCGACTTCTCCGGGATAA	411	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74261.4	1531	2e-24	1408 - 1467	100	60 / 60	plus	ABC04951 ABC08031
MLOC	MLOC_74261.3	1699	2e-24	1325 - 1384	100	60 / 60	plus	ABC04951 ABC08031
MLOC	MLOC_74261.5	1716	2e-24	1312 - 1371	100	60 / 60	plus	ABC04951 ABC08031
MLOC	MLOC_74261.2	1659	2e-24	1174 - 1233	100	60 / 60	plus	ABC04951 ABC08031
JLOC1	JLOC1_49482.2	1812	8e-25	1322 - 1381	100	60 / 60	plus
JLOC1	JLOC1_49482.1	1664	8e-25	1174 - 1233	100	60 / 60	plus
Harvest21	ABC51564	478	3e-25	412 - 471	100	60 / 60	plus
Harvest21	ABC04951	1590	3e-25	1062 - 1121	100	60 / 60	plus	ABC04951
Harvest35	U35_49701	478	3e-25	412 - 471	100	60 / 60	plus
Harvest35	U35_1954	1826	3e-25	1298 - 1357	100	60 / 60	plus

Contig Sequence (478 bp)

>U35_49701 478 Hv_44K_v2
ATTGTTCATCCATGAAGGGGAAGAGGATGCTCCAATTGGCGCCATGCCTGGTTGCTTTAG
GCTTGGATGGCAGCATGGGCTTCTTGCTGAGGTGTATAAGGCACGCGATGTTGGTGTTAA
CAGCTTTGTGCTCTTTCCAAAGGTTCCGGATGCATTGAAGTCTCCAACAGGAGTTGAAGC
ATACAATGACAATGGTTTGGTTCCACGGACAATTCGCCTGCTCAAGGATAAGTTCCCTGA
TATCATTGTCTACACAGATGTTGCTTTGGACCCTTATTCATCTGATGGACATGATGGCAT
CGTGAGGGAAGATGGAGTAATTCTGAACGATGAAACAGTATATCAGATGAACCCAGCTAA
CTACAGGGAGGCCCTTCTAGAAACTGCAGCAGATGAGGCAGAAGGGGCTGATATTCTTCT
AGTGAAACCTGGATTGCCGTACTTGGATATCATCCGACTTCTCCGGGATAATTCCGCA

Homology of Contig U35_49701 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g49110.2	366	7e-72	protein\|delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi0009s00210.6	366	6e-76
Arabidopsis v10	AT1G69740.1	430	3e-66	\| Symbols: HEMB1 \| Aldolase superfamily protein \| chr1:26232197-26234713 FORWARD LENGTH=430