barSeed - Barley Seed Development Database

Probe CUST_15787_PI390587928

Source Contig U35_13777

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15787_PI390587928	Hv_44K_v2	GGTGTTCTGTCCAAGATTCTATTGTTTTCACCAGATGTTCATTGCTACGTTATTCTGATG	523	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19096.1	792	2e-24	288 - 347	100	60 / 60	minus	ABC01037 ABC01082
Harvest21	ABC01082	610	3e-25	28 - 87	100	60 / 60	minus	ABC01082
Harvest35	U35_13777	610	3e-25	524 - 583	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_13777 610 Hv_44K_v2
CCGTGGTGGCCAGTAAGTGCCTGGCAATGGAGCTGCTTCTCTCCTGGTTCACAGTTCTTG
TGTCTTCCTGTTGTCCAACAGGGGTGTCTGTCTCGTCCTGGTCGTTTCTATGTTTCCACC
GTACTGTGATGCATCGGCTGTATCTGAAAACTTCTGCCTTTGTGAAGCAGCTTCTGTGAA
CTATGATAAATAAGTTTTCTGGTACTGATTTTTGTTGCGGTACAACACAGCTTGTGGCAC
CTTTTCTCACATTATTCATGTGAATATTGTACCTTTGGCTGTTATGTCTGCATCATCTGG
TGTAACTGGTTATTCTTCACCTTGGGATCAAATTGGCTATTGGGGGCTTTTCAATGTGAG
ATGGAAGTAATATTAACCATGTCCTTTTGGTCGTGTGTTTGATTCTACCATGATGTAATC
CAGTGCTATGTTAGCAACTTTGATGAACTATCATGAACAAGGAATACAAATCCAGTGCTA
TGTTAGCAACTTTGATGAACTATCATGAACAAGGACTGTGTTCGGTGTTCTGTCCAAGAT
TCTATTGTTTTCACCAGATGTTCATTGCTACGTTATTCTGATGTTATTTGTTTAAAAAAA
AAAAAAAAAA

Homology of Contig U35_13777 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None