barSeed - Barley Seed Development Database

Probe CUST_15665_PI390587928

Source Contig U35_10489

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15665_PI390587928	Hv_44K_v2	ATCAAGATCAAATCGTAGGAAACCGTCGGTCGATCGAGCAGCGGCGACGCAGAAGCAGGA	164	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_548.1	1939	2e-24	296 - 355	100	60 / 60	plus	ABC03165 ABC36918
MLOC	MLOC_548.2	1245	2e-24	295 - 354	100	60 / 60	plus	ABC03165 ABC03167 ABC21862 ABC36918
JLOC1	JLOC1_338.2	889	8e-25	278 - 337	100	60 / 60	plus
JLOC1	JLOC1_338.1	1401	8e-25	308 - 367	100	60 / 60	plus
Harvest21	ABC24647	530	3e-25	165 - 224	100	60 / 60	plus
Harvest35	U35_10489	530	3e-25	165 - 224	100	60 / 60	plus

Contig Sequence (530 bp)

>U35_10489 530 Hv_44K_v2
GCTGAGATACTTTTCCCCAAAGCGAAACCAACTGGAAAGAAGAGAGACGCGCCGCGCCTC
ATCGCATCGCACCGCACCGCACCGCGTTGCCTTTGTATCTATCGCGGCTCTATTTAGCTC
AAGAAGAGGAGAGGGGAGGCGCGCGGGAAGGGGGGCGAGATCAAATCAAGATCAAATCGT
AGGAAACCGTCGGTCGATCGAGCAGCGGCGACGCAGAAGCAGGAGGGGGGATGGCGGTGG
CGTATCGCGCGGAGGAGGAGTACGACTACCTGTTCAAGGTGGTGCTGATCGGGGACAGCG
GCGTGGGCAAGTCCAACCTGCTGTCGCGCTTCGCCAGGGACGAGTTCAGCCTCGACACCA
AGTCCACCATCGGCGTCGAGTTCGCCACCAAGACCGTCCGCGTCGACGGCAAGCTCGTCA
AGGCGCAGATCTGGGACACCGCCGGCCAAGAAAGGTACCGGGCCATCACCAGCGCCTACT
ACCGGGGCGCCGTGGGCGCGCTCGCGGTGTACGACGTGACGCGCCACATC

Homology of Contig U35_10489 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g47730.1	225	5e-57	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g46060.1	220	1e-61
Arabidopsis v10	AT5G60860.1	217	9e-54	\| Symbols: AtRABA1f, RABA1f \| RAB GTPase homolog A1F \| chr5:24484750-24485565 FORWARD LENGTH=217