barSeed - Barley Seed Development Database

Probe CUST_15550_PI390587928

Source Contig U35_46480

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15550_PI390587928	Hv_44K_v2	ACGAGCTCATCATCAAGCTCCACGAGCTGCTCGGCAACAAGTGGTCGCTCATCGCCGGGA	184	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65957.2	2474	2e-24	578 - 637	100	60 / 60	plus	ABC05841 ABC09250 ABC09252 ABC53019
MLOC	MLOC_65957.1	2404	2e-24	417 - 476	100	60 / 60	plus	ABC05841 ABC09250 ABC09252 ABC53019
JLOC1	JLOC1_43442.1	2251	8e-25	418 - 477	100	60 / 60	plus
Harvest21	ABC46674	269	3e-25	185 - 244	100	60 / 60	plus
Harvest35	U35_46480	269	3e-25	185 - 244	100	60 / 60	plus

Contig Sequence (269 bp)

>U35_46480 269 Hv_44K_v2
AAAGGCGCCTGGACCAAGGAGGAGGACCAGCGCCTCGTCGCCTACATCAAGGCCCATGGC
GAGGGCTGCTGGAGGTCCCTCCCCAAAGCCGCAGGGCTGCTGCGGTGCGGGAAGAGCTGC
AGGCTGCGGTGGATCAACTACCTGAGGCCGGACCTCAAGCGGGGGAACTTCACCGAGGAG
GAGGACGAGCTCATCATCAAGCTCCACGAGCTGCTCGGCAACAAGTGGTCGCTCATCGCC
GGGAGGCTGCCGGGGAGGACGGACAACGA

Homology of Contig U35_46480 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36730.1	252	5e-60	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi4g23967.1	266	2e-60
Arabidopsis v10	AT4G38620.1	282	1e-60	\| Symbols: ATMYB4, MYB4 \| myb domain protein 4 \| chr4:18053866-18054876 FORWARD LENGTH=282