- Probe CUST_15479_PI390587928
- Source Contig U35_36578
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_15479_PI390587928 | Hv_44K_v2 | GCCATGTTCCATCAGGACACAATATTATTAGGAACACCATGCATTCCATTTTTTCAAAAA | 12 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.974 | 0.842 | 0.754 | 0.790 | 1.345 | 1.198 |
| Raw | 3.332 | 4.519 | 4.532 | 7.253 | 4.063 | 3.927 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251031.1 | 1127 | 9e-22 | 995 - 1049 | 100 | 55 / 55 | plus | ABC00061 ABC00152 ABC00327 ABC00444 ABC00553 ABC00603 ABC00704 ABC00970 |
| JLOC1 | JLOC1_47574.1 | 1292 | 5e-22 | 1110 - 1164 | 100 | 55 / 55 | plus | |
| Harvest35 | U35_36578 | 502 | 3e-25 | 13 - 72 | 100 | 60 / 60 | minus |
Contig Sequence (502 bp)
>U35_36578 502 Hv_44K_v2 TTTTTTTTTTTTTTTTTGAAAAAATGGAATGCATGGTGTTCCTAATAATATTGTGTCCTG ATGGAACATGGCAATGGGTGGGAATACTTTGCACTTGATTGTAGCATGATTCATACATAG TAATTTCTTGCTACACAAAATGACACAAATATTACAAACCTGGGTAAAAAAAAACTGACA CCCACTGACCCCTGACCGTCATAACAGTTATTCCGAATTCATTCTGCAAATAGTGGAAAA CGTGGTAGGGAATGATAAAAGGCCAAACCAACCGCGCGTGCGGCGATCATAAATAGCAAC GTCACTCAGCATGAAACCATGGGGATTTCAGTGCTGGGCTAGCTGGACGGTCGTAGAACG GAATCAGTGGTGACCGTGGTATCCACCGCCACCGCCGCCGCCGCCGTAAGTGGGCGTGGG AGGGACGGGGTGGTAGTCCGGGTGGGGCTGCGGCTTGGGTTCCGGCTTGGGCACCGGGCC GTAGTCTGGGTGGGGCTGGGGC
Homology of Contig U35_36578 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |