barSeed - Barley Seed Development Database

Probe CUST_15470_PI390587928

Source Contig U35_36580

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15470_PI390587928	Hv_44K_v2	TATAAAGGAATCTGCACAGCCTGATGTACGGCATGAAATATCTCAACTCGTAAAGCCCAT	604	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367597	3754	2e-24	3368 - 3427	100	60 / 60	plus	ABC19920
MLOC	AK248433.1	2474	2e-24	2055 - 2114	100	60 / 60	plus	ABC19920
MLOC	MLOC_21142.8	1633	2e-24	1156 - 1215	100	60 / 60	plus	ABC19920
MLOC	MLOC_21142.10	1641	2e-24	1292 - 1351	100	60 / 60	plus	ABC19920
MLOC	MLOC_21142.5	1631	2e-24	1136 - 1195	100	60 / 60	plus	ABC19920
MLOC	MLOC_21142.1	1603	2e-24	1108 - 1167	100	60 / 60	plus	ABC19920
MLOC	MLOC_21142.6	1574	2e-24	1349 - 1408	100	60 / 60	plus	ABC19920
MLOC	MLOC_21142.3	1567	2e-24	1090 - 1149	100	60 / 60	plus	ABC19920
MLOC	MLOC_21142.7	1363	2e-24	1138 - 1197	100	60 / 60	plus	ABC19920
MLOC	MLOC_21142.4	1712	2e-24	1235 - 1294	100	60 / 60	plus	ABC19920
MLOC	MLOC_21142.2	1814	2e-24	1319 - 1378	100	60 / 60	plus	ABC19920
MLOC	AK374611	2307	7e-23	2000 - 2059	98	59 / 60	plus	ABC19920
MLOC	MLOC_68305.2	2386	7e-23	2260 - 2319	98	59 / 60	plus	ABC19920
MLOC	MLOC_68305.3	2710	7e-23	2584 - 2643	98	59 / 60	plus	ABC19920
MLOC	MLOC_68305.4	2492	7e-23	2366 - 2425	98	59 / 60	plus	ABC19920
MLOC	MLOC_68305.7	2195	7e-23	1658 - 1717	98	59 / 60	plus	ABC19920
MLOC	MLOC_68305.8	2941	7e-23	2404 - 2463	98	59 / 60	plus	ABC19920
MLOC	MLOC_68305.9	2908	7e-23	2371 - 2430	98	59 / 60	plus	ABC19920
MLOC	MLOC_68305.11	1921	7e-23	1676 - 1735	98	59 / 60	plus	ABC19920
MLOC	MLOC_68305.10	2502	7e-23	2290 - 2349	98	59 / 60	plus	ABC19920
MLOC	MLOC_68305.6	2140	7e-23	1582 - 1641	98	59 / 60	plus	ABC19920
JLOC1	JLOC1_14670.4	1502	8e-25	948 - 1007	100	60 / 60	plus
JLOC1	JLOC1_14670.3	1567	8e-25	1013 - 1072	100	60 / 60	plus
JLOC1	JLOC1_14670.2	1699	8e-25	1145 - 1204	100	60 / 60	plus
JLOC1	JLOC1_14670.1	1666	8e-25	1112 - 1171	100	60 / 60	plus
JLOC1	JLOC1_45181.6	2172	4e-23	1607 - 1666	98	59 / 60	plus
JLOC1	JLOC1_45181.5	2856	4e-23	2291 - 2350	98	59 / 60	plus
JLOC1	JLOC1_45181.3	2889	4e-23	2324 - 2383	98	59 / 60	plus
JLOC1	JLOC1_45181.2	2600	4e-23	2035 - 2094	98	59 / 60	plus
JLOC1	JLOC1_45181.1	2205	4e-23	1640 - 1699	98	59 / 60	plus
Harvest21	ABC19920	999	3e-25	336 - 395	100	60 / 60	minus	ABC19920
Harvest35	U35_36580	703	3e-25	605 - 664	100	60 / 60	plus
Harvest35	U35_6792	1407	3e-25	618 - 677	100	60 / 60	plus

Contig Sequence (703 bp)

>U35_36580 703 Hv_44K_v2
GAGCACTTGCAAGGTCCAAGAAGGAACCACCTCCTAGCTCTGTTGCTGATGATGCTAGTC
ATGAAAGATTGGTAAAGGCGGCCCGCATGACTGAGATAGAGGATCTGCAAGCTCCACGAA
GTCTCCCATATGCACTACTTTGTATAAAGGATCCTAGAGAATATTTTGATTCTCAGCAAG
CAAATGCTCTGAGACCTTTAGGTAGTAACGATGGAAGAAAGGCCCGCAGCTGCAGCCTTA
GTACGGATGATGCATTCCGTCATTTAATGGATCAAATATCTTCCGTGAAAATGAACTGTC
CGGTTGTTCAGTCAGATGTTGCTCTAAAGGAAAACCTAACTACCTACATGGTATGGGCCT
AGGTTCTTAATGAATTGAATGAAGGAATTTCACGTTCACGGAGGCTTAATCTTAAGAATC
CCCAAGACAGTCTCCTTGGCCGTCTTCCTCACCGAACACGGGATGAACTTATGGATCATT
GGATGGCTATCCAGGAGTTGCTGCGCCATTTTTGGTCATCATACCCAATAACAACCACAG
TCCTTTGTAATAAGGTTCAACGGCTTAAGGAAGCAATGACACAGATATATCAGAAGTTAC
AGGATATAAAGGAATCTGCACAGCCTGATGTACGGCATGAAATATCTCAACTCGTAAAGC
CCATGACGCANGCGCTGGATGCTGCATTCAACCATGAGCATGA

Homology of Contig U35_36580 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g25060.1	605	1e-123	protein\|BSD domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi3g16990.1	603	4e-131
Arabidopsis v10	AT3G61420.1	579	1e-54	BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) \| chr3:22727235-22731760 REVERSE LENGTH=579