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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_15443_PI390587928Hv_44K_v2AGATGAGATAGTATGATCTGGTATTAGTATGATGAGTATCTCCCCCTTTGTGAAGACAAT397GeneList: darkolivegreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.2860.2470.7231.5911.5052.154
Raw 544.252741.9861910.0006400.2732145.3373397.870



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK3750206263e-22540 - 5989859 / 60plus ABC05839 ABC44739
MLOCAK248394.16873e-22453 - 5119859 / 60plus ABC05839 ABC44739
MLOCMLOC_58483.112303e-22811 - 8699859 / 60plus ABC05839 ABC44739
JLOC1JLOC1_38002.110681e-22730 - 7889859 / 60plus
Harvest21ABC317075453e-25398 - 45710060 / 60plus
Harvest35U35_365925453e-25398 - 45710060 / 60plus



Contig Sequence (545 bp)

>U35_36592 545 Hv_44K_v2
GACACGCACGCACGCACACACACTCACTCCACGCTCGGCCAGCACAACAAGCAAGTTCAG
TTCAGGTTGGGGGATCGATCGGATAATGGCGCCGGCGCCGGTGGAGTTCGTGGGCGCGAG
GGAGGCAGGCGGGGTCGGCGGGGACGCGCTCTACTGCGCCATCATCCTGTGGCTGTCCGT
CATGTCGTGGATCATCTTCACCTGCGTCGACTAGCCTGCCGCCGCCCGCCCGGCTCCTCC
AAATCGTACGTTTGGTTGGTCGGTAACTTCGTGTAATCGGGCGTCAAAAAGTAGTATGAT
CATCTACTAGTATCTATGGTGTGATGAACAACTCCTTTTCTCATGCGAGCTTCTTGCAGC
CTGTAAATAGTTTTAGCGATCGATGATCGATGAGATGAGATGAGATAGTATGATCTGGTA
TTAGTATGATGAGTATCTCCCCCTTTGTGAAGACAATAAGAGGGAGCTAGCAGCGTCTTC
CGTCTGATCCTGGTTCCCGGTTTGGCTGCAACCTGCAAGAACTAGTCTCGATTCTTCATC
TTCTT



Homology of Contig U35_36592 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None