barSeed - Barley Seed Development Database

Probe CUST_15435_PI390587928

Source Contig U35_36597

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15435_PI390587928	Hv_44K_v2	TAGGGTATTTCTCACTATGAAAGAGAACTAACTTAGTCGACCTCCTCGATCTTGGGCCCA	363	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248694.1	2194	7e-23	2022 - 2081	98	59 / 60	minus	ABC00044 ABC00326 ABC00873 ABC43426 ABC49753
MLOC	MLOC_12446.5	1941	7e-23	1448 - 1507	98	59 / 60	minus	ABC00044 ABC00326 ABC00873 ABC43426 ABC49753
MLOC	MLOC_12446.3	1300	7e-23	925 - 984	98	59 / 60	minus	ABC00044 ABC00873 ABC43426 ABC49753
MLOC	MLOC_12446.4	1418	7e-23	1202 - 1261	98	59 / 60	minus	ABC00044 ABC00326 ABC00873 ABC43426 ABC49753
JLOC1	JLOC1_8350.1	2611	4e-23	2141 - 2200	98	59 / 60	minus
Harvest21	ABC31714	512	3e-25	364 - 423	100	60 / 60	plus
Harvest21	ABC00738	2236	1e-23	2010 - 2069	98	59 / 60	minus
Harvest21	ABC00691	1235	1e-23	179 - 238	98	59 / 60	plus
Harvest21	ABC00276	498	6e-22	170 - 229	97	58 / 60	plus
Harvest35	U35_36597	512	3e-25	364 - 423	100	60 / 60	plus
Harvest35	U35_34450	608	1e-23	119 - 178	98	59 / 60	minus
Harvest35	U35_432	2323	1e-23	2021 - 2080	98	59 / 60	minus

Contig Sequence (512 bp)

>U35_36597 512 Hv_44K_v2
GGCGCCGCCGCCTTCCACCGGCTCGAGCTCCAGCCTTCCCTTCACCATGGCGGACGTTGA
TGTCGACCCCGAGGTGGCGGCCGCCGGCCCCAAGAAGAGGACGTTCCGCAAGTTCAGCTA
CCGCGGCGTGGACCTCGACGCTCTCCTCGACATGTCCAGTGAGGATCTCGTCCAACTCTT
CCCCGCGCGCGCCCGAAGAAGGTTCTCGAGNNTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTGACCAAAACATGCATCATTGCAATGTTTAAGACAGATACACTAGTCTCAC
GATTAAACAAAATTTTCAACCCAGGTGATATGATTGGCACCCAGGGCCGAAACAAATGGC
GTATAGGGTATTTCTCACTATGAAAGAGAACTAACTTAGTCGACCTCCTCGATCTTGGGC
CCAGCACCGCCGCTGGCAGCCGGCACATCATCGTCCATGCCTCCGGGCATGTCAGCACCA
GCACCCTGGTACATTTTGGCAATGATGGGGTT

Homology of Contig U35_36597 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None