barSeed - Barley Seed Development Database

Probe CUST_15397_PI390587928

Source Contig U35_7509

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15397_PI390587928	Hv_44K_v2	TCTCTACCTCAAAGTAAACAAGAAAGCAGGCTGAGATCTACCAGGTCTCATGTACGCATG	505	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368414	953	2e-24	534 - 593	100	60 / 60	plus	ABC13958
MLOC	MLOC_38688.1	1105	2e-24	557 - 616	100	60 / 60	plus	None
MLOC	MLOC_38687.1	1104	2e-24	621 - 680	100	60 / 60	plus	None
MLOC	MLOC_38687.2	1109	2e-24	621 - 680	100	60 / 60	plus	None
MLOC	MLOC_38687.4	1728	2e-24	620 - 679	100	60 / 60	plus	ABC06045
MLOC	MLOC_38687.3	1202	2e-24	621 - 680	100	60 / 60	plus	None
JLOC1	JLOC1_25176.5	1042	8e-25	555 - 614	100	60 / 60	plus
JLOC1	JLOC1_25176.4	1140	8e-25	555 - 614	100	60 / 60	plus
JLOC1	JLOC1_25176.3	1679	8e-25	556 - 615	100	60 / 60	plus
JLOC1	JLOC1_25176.2	1038	8e-25	556 - 615	100	60 / 60	plus
JLOC1	JLOC1_25176.1	1136	8e-25	556 - 615	100	60 / 60	plus
Harvest21	ABC15673	680	3e-25	506 - 565	100	60 / 60	plus
Harvest35	U35_7509	680	3e-25	506 - 565	100	60 / 60	plus

Contig Sequence (680 bp)

>U35_7509 680 Hv_44K_v2
CCAGATCCAGGTCGAGGCCACCGCCACCTCTGGTGCCACACCCCTCGCGCCTCTCCTCTT
CCTCCACCTCTGTTGCTGCCGGCTCCTACCCAGTCCTCGCCCTCCGGTGCCTCCCCATCC
TTCGCGGCCGTACGCACCAAGGCTGAGGCGGTGACGGGCTCATAGGCCAACGACGCGTCG
GGCCGACGCACATCCAGGGTCGCGCAGGCGCAGCACGAGCCACTTCTTCTTGCCCTCGTC
CCGTGGCGTGGGAGAGGATGAGGAGGAGCCCTCGTCGCGTGGGGATCTGTGGCACGCGTG
CGCGGGGCCGGGCATGGCGCTGACCAGGCATGGGAGCGTAGTCGTCTCGCTCCCGCAGGC
GCACCCGTGGCCGACGGCGGGGATGCGTGAGTGTGTAGGACGCGGCGGGTGGCGACAATC
ACCCATCGCCTCCTCCCTCCTACACCCCGCCAGATCTCACGGTCCAAGCTAACAAGAGCG
ACTACAACAACGTGATGGGTGCTCTTCTCTACCTCAAAGTAAACAAGAAAGCAGGCTGAG
ATCTACCAGGTCTCATGTACGCATGGCTCGCGCTGGTTGCGGAGGCCGAGGCTTGTGGTG
AAGAACTGCAAGGCCGAGTAGTACCCCAACAAGCCCAAGCGCACCTCAAGCACCTCAAGC
TATGTTGCAGGATGTTCCTT

Homology of Contig U35_7509 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None