barSeed - Barley Seed Development Database

Probe CUST_15346_PI390587928

Source Contig U35_37793

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15346_PI390587928	Hv_44K_v2	AGGAGTTCTGTCAATACTACGGACAAAAGGGCATGCCTTAATAAAGTGCCACTAACTGTA	314	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32988.2	5522	7e-23	3380 - 3439	98	59 / 60	minus	ABC02019 ABC06879
Harvest21	ABC33494	595	3e-25	315 - 374	100	60 / 60	plus
Harvest21	ABC26811	742	1e-23	191 - 250	98	59 / 60	plus
Harvest35	U35_37793	595	3e-25	315 - 374	100	60 / 60	plus
Harvest35	U35_28130	742	1e-23	191 - 250	98	59 / 60	plus

Contig Sequence (595 bp)

>U35_37793 595 Hv_44K_v2
GCTCCGCTGCCGTCGCGCGAGATCAACCCCGCCGCCATGGCTGGAGAAGCTGATGGGAAG
ACCTACCAGGTATCAAGGATGCCCCCTGCTGCTCTCAATGAGCGCATCCTTTCTTCCATG
TCTCAAAAGCATGTTGCTGCTCACCCATGGCACGACCTGGAGATAGGTCCAGGAGCTCCT
GCAGTTTTCAACTGTGTTGTTGAGATTCCTAGAGGCAGCAAAGTCAAGTATGAGTTGGAC
AAAGCAACTGGTCTTATCAAGAATGTAAAAGAGAGATTAAAGACATCATCGGTTAACACT
GCATGTACAAATTGAGGAGTTCTGTCAATACTACGGACAAAAGGGCATGCCTTAATAAAG
TGCCACTAACTGTAGGTTGGTCAGTAAGTAGTAGCACATATGAATGTGGAGCACTTGCAT
AGTTGCATGTTACAACTACTTTTATTCTGCATTGATAAAAGAGAACTTGAATGTTTTGTT
TGTTCCAGGTTGATCGTGTTCTTTACTCCTCAGTTGTGTACCCACACAACTATGGCTTCA
TTCCACGCACACTCTGTGAGGACAATGACCCGATGGACGTCCTTGTCCTGATGCA

Homology of Contig U35_37793 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None