barSeed - Barley Seed Development Database

Probe CUST_15344_PI390587928

Source Contig U35_49770

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15344_PI390587928	Hv_44K_v2	ATTCGAGCTTTTAGATTATTTGCTTTCCAGCTACTTTGCTACTTTGGTAGCCGGTTTAAT	462	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14686.3	1826	2e-24	540 - 599	100	60 / 60	plus	ABC07412
JLOC1	JLOC1_10028.6	1838	8e-25	542 - 601	100	60 / 60	plus
Harvest21	ABC51672	522	3e-25	463 - 522	100	60 / 60	plus
Harvest35	U35_49770	522	3e-25	463 - 522	100	60 / 60	plus

Contig Sequence (522 bp)

>U35_49770 522 Hv_44K_v2
GGGTACCACGAGCGGGTGGTGGACCACTACAGCAACCCGCGCAACGTGGGGGAGTTCGAC
AAGGACGACGTCGACGTCGGCACCGGGCTCGTCGGCGCGCCCGCCTGCGGGGACGTCATG
AATATGCAGATCCGCGTCGACCAGGCCTCCGGCAGGATCGTCGACGCCTGCTTCAAGACC
TTCGGCTGCGGCTCCGCCATCGCATCCTCATCCGTCGGAACCAGAGCAGGTGAGGGGGTG
GCTCTAGGAGTTGGCGGTGTCTCCAGGGCCGTCGAGAGGCGTTGGGTCTAAGGCTTCGTG
CCTCCGCGGCCGGGATCAAGCAAGTCAGATGGGAGCCTTCCACGAGCACATTTCTCATGT
CCAGGGAGGCCTCCTTTTCGCCGAGCTCCAGATCCATGACACCGCTCGCAGGCATCGATT
CTGTTGCTGCCTATTCGGCGGACCGAGGTACCCATTCATCACATTCGAGCTTTTAGATTA
TTTGCTTTCCAGCTACTTTGCTACTTTGGTAGCCGGTTTAAT

Homology of Contig U35_49770 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None