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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_15337_PI390587928Hv_44K_v2AAGGAGGTGTACGAGAAGGCGTTCGGCGACGAGGATAAGCGGGAGCGGTTCCTCAAGTGG240GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1101.4852.2731.0330.2660.239
Raw 83.947155.398228.198162.26214.77214.573



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35660122647e-231187 - 12469859 / 60plus ABC08282 ABC15559 ABC22451 ABC46891 ABC46892
MLOCMLOC_212.27297e-23140 - 1999859 / 60plus ABC08282 ABC15559 ABC46891
MLOCMLOC_212.125737e-231371 - 14309859 / 60plus ABC08282 ABC15559 ABC22451 ABC46891 ABC46892
JLOC1JLOC1_144.124714e-231250 - 13099859 / 60plus
Harvest21ABC516864213e-25241 - 30010060 / 60plus
Harvest35U35_497794213e-25241 - 30010060 / 60plus



Contig Sequence (421 bp)

>U35_49779 421 Hv_44K_v2
GTGGGCGAGGACGAGCGCACGGACGCGGTGCTGCTCAAGTTCCTGCGCGCGCGGGAGTTC
AAGGTGAAGGAGGCGATGGCGATGCTGAGGTCCGCCGTGCTGTGGCGTAAGCGCTTCGGC
ATCGAGTCGCTCCTGGAGGCCGACCTGGCCTTCCCGGAGCTGGAGAAGGTGGTGTTCTAC
CGCGGCGCCGACCGGGAGGGCCACCCGGTCTGCTACAACGTTTACGGCGAGTTCCAGGAC
AAGGAGGTGTACGAGAAGGCGTTCGGCGACGAGGATAAGCGGGAGCGGTTCCTCAAGTGG
CGCATCCAGCTGCTGGAGCGCGGCATCCTGTCGCAGCTCGACTTCGCGCCCAGCGGCACC
TGCTCCATGGTGCAGGTCACCGACCTCAAGAACTCGCCGCCCATGCTCGGCAAGCACCGC
G



Homology of Contig U35_49779 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g65380.16143e-86protein|patellin protein, putative, expressed
Brachypodium v1_2Bradi2g56530.25864e-89
Arabidopsis v10None