barSeed - Barley Seed Development Database

Probe CUST_15335_PI390587928

Source Contig U35_49781

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15335_PI390587928	Hv_44K_v2	TGTTGCAGCGCGAGGGAATAATTCCCCTAAAGGTGAAATGACTCATGAAAAAGGGTTTCC	69	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2469.1	772	3e-21	5 - 64	97	58 / 60	minus	ABC01330 ABC51688 ABC52339
Harvest21	ABC51688	328	3e-25	70 - 129	100	60 / 60	minus	ABC51688
Harvest21	ABC52339	493	1e-23	70 - 129	98	59 / 60	minus	ABC52339
Harvest35	U35_49781	328	3e-25	70 - 129	100	60 / 60	minus
Harvest35	U35_50266	493	1e-23	70 - 129	98	59 / 60	minus

Contig Sequence (328 bp)

>U35_49781 328 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGGGGGAACTGGCCTGGGGTATGGGTTGGTTGATTTGAAATGC
AAAGGGGGGGGAAACCCTTTTTCATGAGTCATTTCACCTTTAGGGGAATTATTCCCTCGC
GCTGCAACAAACGGGGGCCTTTAATACCCAGTTGCAAAACCATGAAAGGGAAATGAACCA
ATGTTTCCCCCCACAAATGGAACAAAATCCCCACCTTTTAGGGCCAAATCAAAACTGGGA
AAACCTTTTTCGGGGGCCCAAACTGGTGAGGGATCAACCGATTAGTTGTCTTTTACCCCC
AAAAAAGCTACCCCGTTTTTTAAAATCC

Homology of Contig U35_49781 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None