barSeed - Barley Seed Development Database

Probe CUST_15308_PI390587928

Source Contig U35_8721

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15308_PI390587928	Hv_44K_v2	CGATCCATGCATGCCTGTACGTGTGCATGTCATTACTGATAAATAATCTCGAGGACTAGT	1719	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.651	1.345	1.198
Raw	2.557	3.057	2.325	4.436	2.722	2.700

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71324.1	1213	3e-21	94 - 153	97	58 / 60	minus	ABC04174 ABC07001 ABC16814
JLOC1	JLOC1_47399.1	1113	2e-21	37 - 96	97	58 / 60	minus
Harvest21	ABC16814	1779	3e-25	1720 - 1779	100	60 / 60	plus	ABC16814
Harvest35	U35_8721	1779	3e-25	1720 - 1779	100	60 / 60	plus

Contig Sequence (1779 bp)

>U35_8721 1779 Hv_44K_v2
TGCATCCGATTAATGGAGGAAATAGTAATCGACTCTGTTGATTCTGAGAGTCTCTAGTCT
CCCATCAAATAACCATTTATAGATGGTTTGTGTTATTGGACTAAAAATATGGAGTGGCAA
TGGGTATTCGGCACAAAATTGGGAGGGCCTGCAAGAAAATAAGTCCACCGTAATATGCAC
TATGCGCCGGGCTATCTATGACCCTGGTGTAGTAACTATAGTACACATCACAAAGTTGGA
GAACATATTGTATTAGTACAAGCTAATCTTAAGGTTAATTTCTAGGCCAATCTCATATTT
TATTAGTACAAAACAACAAGTTTGAGCAGATCAGTATATCTTTTGGGAACAGGACAACAT
GCAGGCTAATTTTCTGTCGTTGATCGATGAATGTTGGGTCAATTTCAACAATTTATGAGA
GAAGACATGTCACATGATCCTGTAGTAATGAAGATGATAAGGGTAATTTGTGTCATGTCA
CATTCTTGCAAAACAAAAATTGTGGCATGTCACATTCAGAATTCAAACCACACCTTTCTC
CTCCGATTTTCCACACACACAGAGTTGATCTTGCATACAATCACAGGACGGCTTCTCTCC
ACCAAATAAGGTCTATAAATTGGCGCCATAATCCATGAGGCAATAGGCATCGAGATCAAC
CAGACCGTGCCTACACTGAGAATGAGAGGCCCGAGTGTGGTGGTGGCCATCGTGGCCATC
GTCCTGTCGGCGGCGCTCGCCATGGCCATGGTGGTCCGCGCACAGCAGTGTGGCTCGCAG
GCCGGCGGCGCGACGTGCCCGAACTGCCTCTGCTGCAGCCGCTTCGGTTACTGCGGCAGC
ACCTCCGACTACTGCGGCGCCGGCTGCCAGAGCCAGTGCAGCGGCTGCGGCCCCACCCCT
CCCGGCCCCAGCCCCGGCGGGGGCGTGTCGTCCATCATCTCCAGGGACCTCTTCGAGCAG
TTCCTCCTCCACCGCGACCGATGCCAAGATGCCGCCGGGTTCTACACGTACGACGCATTC
CTGGCCGCCGCCGCCACGTTCCCGGCCTTCGGCACCACGGGGAGCACCGAGACGCGGAAG
CAGGAGGTGGCGGCCTTCTTCGGGCAGACCTCCCATGAGACCACCGGCGGTTGGGCCACC
GCGCCTGACGGCCCCTACTCCTGGGGCTACTGCTACAGGCGGGAGCTGGGCTCGCCGCCC
GACTACTGCCAGCCATCCTCCCAGTGGCCGTGCGTGCAAGGCAGGCAGTACTACGGCCGC
GGCCCCATCATGCTCTCATGGAACTACAACTACGGCCCTGCCGGGCGCGCCATCGGCGTG
GACCTGCTCAACAACCCGGACCTGGTGGCCACGGATGCCACCGTGTCCTTCAGGACGGCA
CTATGGTTCTGGATGACGCCGCAGGCCAACAAGCCGTCCTCTCACGCCGTGATCACGGGC
CAATGGACGCCGACGGCCGCAGACAACGCGGCGGGGAGGGTGCCCGGCTATGGCGTCATC
ACCAACATCATCAACGGCGGGCTCGAGTGCGGCAGGGGGGCGGACAGCCGTGTTGCCGAC
CGGATCGGCTTCTACCAGCGCTACTGCAACATCCTTGGCGTCGGCTACGGGGGCAACCTC
GACTGCTACAACCAGAGGCCCTTCGTCGAGGGGCTTCTGATTCAGCGAGTAACGGAGTAA
CAACATATATACATACTACCATCTAAACGTATGAGTCCTCGATCCATGCATGCCTGTACG
TGTGCATGTCATTACTGATAAATAATCTCGAGGACTAGT

Homology of Contig U35_8721 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33130.1	341	8e-138	protein\|CHIT17 - Chitinase family protein precursor, expressed
Brachypodium v1_2	Bradi1g29887.1	321	2e-134
Arabidopsis v10	AT3G12500.1	335	3e-128	\| Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB \| basic chitinase \| chr3:3962501-3963984 REVERSE LENGTH=335