barSeed - Barley Seed Development Database

Probe CUST_15286_PI390587928

Source Contig U35_8744

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15286_PI390587928	Hv_44K_v2	GAACTTGAACTGTTCCGATGTTGTTTTTCGGAATGTTAATAAGTGTTCCTGCTGACTAAA	626	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356340	1094	2e-23	1036 - 1093	100	58 / 58	plus	ABC06780 ABC06781 ABC34527
MLOC	MLOC_12402.1	1818	9e-22	8 - 65	98	57 / 58	minus	ABC34527
JLOC1	JLOC1_8318.1	997	5e-22	52 - 109	98	57 / 58	minus
Harvest21	ABC20139	700	3e-25	15 - 74	100	60 / 60	minus
Harvest21	ABC34527	677	1e-23	15 - 74	98	59 / 60	minus	ABC34527
Harvest35	U35_8744	700	3e-25	627 - 686	100	60 / 60	plus

Contig Sequence (700 bp)

>U35_8744 700 Hv_44K_v2
GCAGCCGGACAAAATCCCGCTGCCCAAGTCCATCGCGCCGCCCGGCTCGATTCCTCTGCC
ACCTGAGCAGGACACCTTGCTGAGCCAGAACTACCAGCTCCTACCCGCATTGAAGCCGCC
AACTCAGACCGAGGAAGCAGAAGACGAGGAAGAAGGCGCCAACGCAGACGCTGCCAATCC
TAACCCGAACTCCTCGCAGGATCAGAGGGGCAACGAGCAGCAGCACCAGCCTCAGAGCCA
GGGCCAGAGGGTTTCTTTCCAGCTGAACGCCGTGGCCGCTGCAGCCGCAAAGCGTCCTCG
AATGACGATTGATCAGTTGAACATGGGCTGACTGGCTGTTGTAGAGATCGTTGGCGTTGG
CTGGTTCCTGTTACTTGTTCCCGCAAGGCTGCCTGCTGAATGCTGATTTGTGTGTAGTGT
AGCTTGCTGGGATCGCCCTTTTTGGTCCTCCTATTTCACCATGAGATTGTTCATAAGTTA
ATAATTCACCATGAGAAACGCTGATGCTTCAGCAAAGGGAGCAGCCTTGCAAATAATGTA
TGTTGTAGCTGTGCAACTCAGGTTGATTAGTTTCTGTCCATTGTTGTCAACTTGGTTTGT
TTTGTAGATTGTATTTACTTGTCGTCGAACTTGAACTGTTCCGATGTTGTTTTTCGGAAT
GTTAATAAGTGTTCCTGCTGACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8744 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None