barSeed - Barley Seed Development Database

Probe CUST_15278_PI390587928

Source Contig U35_8753

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15278_PI390587928	Hv_44K_v2	GCCACCGTCCTTGCCATTGGCAACGAATGCGACATTGCAATGTTAACTGTTGATGATGAT	605	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.878	1.136	1.302	0.875	0.555	0.297
Raw	124.992	103.057	117.295	112.921	27.439	16.239

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359231	2129	2e-24	621 - 680	100	60 / 60	plus	ABC09517 ABC13939 ABC40320
MLOC	MLOC_28415.1	659	2e-24	184 - 243	100	60 / 60	minus	None
JLOC1	JLOC1_19066.1	1349	8e-25	411 - 470	100	60 / 60	plus
Harvest21	ABC00483	1008	3e-25	949 - 1008	100	60 / 60	plus
Harvest35	U35_8753	665	3e-25	606 - 665	100	60 / 60	plus

Contig Sequence (665 bp)

>U35_8753 665 Hv_44K_v2
TGGACAACCACGACGCTCCCAAGCGCAAGCGCGGCCGCAAGCCGAAGCCGCCGGCCGCCG
CCACCGCCACCGCCACCGACAACGGCAACCACGACTCCGCCCCCTCGCCGAAGCCCAAGC
GCGGACGCAAGCCGAAGCCGCCGGCCGCCGCTTCCCCTGACAACGACCACCCCTCGTCCC
CCCTCGCCGCCGCCGCGGACACCCCCGAGCCAGGTTCCTCCTCCGGACCCCGCGGCCGCC
GCAAATCCCGACGCGGCCGCCACGAGCTCCCGTCAGATGCCGACGCCGCCCTCCGCGCTC
CCCCCTCCCCGACACGGCGCGGCGCGCCCAAGGGGGCGGCCAACATGAAGGTGGAGGTCC
CAGCGGTGGAGCCCTTGCGGTGGGAGCAGGTGGCCAAGGTGATGCCCTCCATGGACGCCG
TGGTAAAGGTTTTCTGCGTGCACACGGAGCCGAACTTCTCAATGCCATGGCAGCGCAAGA
AGCAGTACAGCTCAAGCAGCAGCGGGTTCATCATCGGGGGGCGCAGGGTGCTCACCAACG
CCCATTCCGTCGAGCACTATACCCAAGTCAAGCTCAAGAAGCGCGGCTCGGACACCAAGT
ACCTCGCCACCGTCCTTGCCATTGGCAACGAATGCGACATTGCAATGTTAACTGTTGATG
ATGAT

Homology of Contig U35_8753 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g12780.1	629	5e-71	protein\|OsDegp10 - Putative Deg protease homologue, expressed
Brachypodium v1_2	Bradi1g44967.1	600	6e-86
Arabidopsis v10	None