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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_15274_PI390587928Hv_44K_v2GGGCATGTATGCTCAGTTTCTACATGCCCGGATCCAAAATAACATCAGTTCAATAAAAAA924GeneList: lightyellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.3280.4441.0771.5690.8421.226
Raw 6.47113.53632.94370.75214.50822.329



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_199.113339e-221110 - 116410055 / 55plus ABC09715
JLOC1JLOC1_135.214435e-221114 - 116810055 / 55plus
JLOC1JLOC1_135.114385e-221109 - 116310055 / 55plus
Harvest21ABC097159953e-25925 - 98410060 / 60plusABC09715
Harvest35U35_43219953e-25925 - 98410060 / 60plus



Contig Sequence (995 bp)

>U35_4321 995 Hv_44K_v2
TGCAAATTTCCATTCTCTCCCTAACACTGCCTCTGTGCCTCGTCCAACCGTGGCTGTAGA
GGAGCTCGCCTGAGACTTGTTCCGTCTCTCAAGAAGGCTAGCCAGCTGCCGTCCATCTTG
TTATCTCGTTCTCTCCCTCGGCTTTCCCTTCTTTCTATTATAATTTTTGTTTTCTCCAGT
CCAGGGAAGGGAGCCGCCATGGAACCGTAGCACCCTGCCTCTCGTGGAGCTCGCCGCCTC
CAGCTACCTCTCCATTGATCAGTCCGACGCCTCCGGCCAGATCTCCCTCGATCCGTCCGC
CACGCGTCGGATCCACGCCGGAGCAGCCGGATGCGCCGCCAGGGAACGCATCACCCCATG
GCCTTGGAGCTCGCCGCCTCCAGCTACCTCTCCATTGATCAGTCCGACGCCTCCGGCCAC
ATCTCCGTCGATCCGTCCGCCAAGCGTTGGATCCACGCCGGAGCAGCCGGATGCGTCGCC
AGGGAACCGCATCACCCCATGGCCTTGTAGCTCACTGCCTCGAGCTACCTCTCCATCGAT
CCGTCTGTCCCGCTGCCGGATTCGTTGACTGCTCAGCCCGTCATGGGTCTGTGCCTCGAT
CTGTTTGCCCCGTCGCTCGATGCACGCGGGAGCAACTGGGCTGCGGGTTCGATCTGTCTG
CCCCGTCGCTGGATGCATGCGAGAGCAGCTGGGCTGCGGGTTGATTTATCAGAAACTGGG
GAGAAGGGGGTTTATGTAAAACTGAATCGTTTCTCCCACTTTAATTGGTAGTGCGGGTTT
AATATGTACAATATTAGGAGCTTTTCTGCAAAACAGCCTATTATTAGGGAGAGATATATC
TCTTAGTTAAATTTTAAATTTAAATTTAGTCCGATCGCGCTGGATCACATCAGCGCGGAT
CGCATGCCCGATCAGAACCAAAAAGGGCATGTATGCTCAGTTTCTACATGCCCGGATCCA
AAATAACATCAGTTCAATAAAAAAAAAAAAAAAAA



Homology of Contig U35_4321 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None