barSeed - Barley Seed Development Database

Probe CUST_15214_PI390587928

Source Contig U35_4381

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15214_PI390587928	Hv_44K_v2	GCCAATATTCCTGGTTTCCTCTTCTAACCATTTCGATTGTAGATCCAGATCTTTAAAAAA	1187	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364917	3308	9e-22	3229 - 3283	100	55 / 55	plus	ABC03880 ABC03882 ABC03883 ABC09378 ABC12834 ABC13308
JLOC1	JLOC1_25887.1	1416	5e-22	1334 - 1388	100	55 / 55	plus
Harvest35	U35_4381	1259	3e-25	1188 - 1247	100	60 / 60	plus

Contig Sequence (1259 bp)

>U35_4381 1259 Hv_44K_v2
TAATTCGGGCGCGCAGCAACGCGTCCATCCAAACCCAACACGTGGAGGCGGAGCGGCGAA
ACCTTCCGTCCAACAGAAACGCCTTTGGTTCTCTCTCCTTTTCCGTGACAACGGCAAACC
AAACCAGACCAGACCAACACACAGCGCAAAATCTTCCGATCTCCCTCCTCCCGACTCCCG
AGTCCCCGCTCCCCCTTCGTCGCGCATAGATCCGCGGCCATGGCGTCGCGCAGGCGAATG
CTCCTCAAGGTCATCATCCTCGGCGACAGCGGGGTCGGGAAGACGTCGCTGATGAACCAG
TACGTCAACAACAAGTTCAGCAACCAGTACAAGGCCACCATCGGCGCCGATTTCCTCACC
AAGGAGGTCAAGATCGACGACCGCCTCTTCACTCTACAGATATGGGACACAGCAGGACAG
GAACGTTTTCAGAGTCTTGGTGTGGCATTTTACCGGGGAGCTGACTGTTGTGTTCTCGTA
TATGATGTCAATGTTACCAAGTCATTTGAAAAACTCAACAACTGGCGCGAGGAATTCCTA
ATTCAAGCTAGCCCATCGGATCCAGAGAATTTCCCTTTTGTTTTACTTGGAAACAAGATT
GACGTCGATGGTGGTAACAGCAGGACTGTTTCTGAGAAAAAGGCTAAAGCTTGGTGTGCT
TCGAAGGGAAACATCCCTTATTTTGAGACGTCTGCTAAAGAAGGCTTCAATGTGGAAGCA
GCTTTCGAGTGTATAGCAAGGAATGCTATCAAGAATGAACCTGAAGAAGATATATATCTC
CCTGATACAATTGACATGGGCGGTGCTGGAAGGCAACAACGCTCGACAGGCTGTGAATGC
TAGAAGATACGGATCCTCCTCAGTTCTGATTGGCCTGGTGATGCTTGCTCGTCCAGAGTT
CGATATATATATAAATATATATATATATATAGTTTGAAAGCTGCTATCGTGTATCGGTTG
CTACATATGGTTGTCTAGTATTCACTCCCTTCCAACGAGACGGGAGAAATTTCATTCATA
ACTTCTGATTCTTTGTATGAGCGCTAGATGGTATAGAGTTGGCATTCTTTTTAGTCTTTG
CGAGCTTTTGGTTGTTGTGGTGCGTGTGTGTGTGTGTATATATATATATATCTCAGAAGA
TCAAATACTATATTTATGATGAAGATTGTAACCGGACAGAAGGACGGGCCAATATTCCTG
GTTTCCTCTTCTAACCATTTCGATTGTAGATCCAGATCTTTAAAAAATTTAGAGAAAAA

Homology of Contig U35_4381 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g12730.1	208	6e-138	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g07570.1	208	1e-140
Arabidopsis v10	AT1G52280.1	206	1e-127	\| Symbols: AtRABG3d, RABG3d \| RAB GTPase homolog G3D \| chr1:19468150-19469449 REVERSE LENGTH=206