barSeed - Barley Seed Development Database

Probe CUST_15154_PI390587928

Source Contig U35_20529

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15154_PI390587928	Hv_44K_v2	TGCTTAACTGTTGATCTCCCAATACTGGAATCAGCACTTGATATCCTATAGAGGCCCTTT	1079	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65319.1	6744	2e-24	2580 - 2639	100	60 / 60	plus	ABC13025 ABC40649
MLOC	MLOC_65318.1	1895	2e-24	1651 - 1710	100	60 / 60	plus	ABC13025
MLOC	MLOC_65318.2	2004	2e-24	1562 - 1621	100	60 / 60	plus	ABC13025
Harvest21	ABC13025	1139	3e-25	1080 - 1139	100	60 / 60	plus	ABC13025
Harvest35	U35_20529	1139	3e-25	1080 - 1139	100	60 / 60	plus

Contig Sequence (1139 bp)

>U35_20529 1139 Hv_44K_v2
CTTTTTCTAGGAACCCTCCTATGGGTAGTTTCCAGAACGATATTGAGACGTCTAGGGAGA
TGAATGTGGACGAAGGTTGCAAGGATGCATTATTAACCGGTGATAAGCAGCAAGGAGACA
CCGAGAGTTCACATGGCGTTGATGCCTCCAGCAAGGAGTTAAGCAAGCCGGAGTGCAGTG
GTGGTGCTGGTCAGGATGAAGGGCCTAGTGTGTCTTGTCCCAAGAAGAGGAAAAGACCAA
GCCAGGATCGTGGGGTGAAGAATGTACAAGAAGGAAGCCAGCAATTGGCAACTCTGGCTG
CAAAGCAGGAGAAAGATGATGGCGACAAAGATGAACCGAAGAGGCCTATTGTGACGTCCA
GAAAGTCCAACGGGAAGCAAACTGAGGATAAATCTGATGCACCGAAGGAAGACTACATTC
ATATAAGAGCTCGAAGTGGCCAGGCTACAAACAGCCATAGTCTTGCAGAAAGGGTTCGAA
GGGAAAAGATTAGTGAAAGGATGAAATTTCTTCAGGACCTTGTTCCTGGTTGTAGTAAAG
TTATTGGTAAAGCTGTTATGCTGGATGAGATAATCAATTATGTTCAATCACTACAGCGGC
AAGTCGAGTTTTTGTCGATGAAACTTTCAGCTGTCAATCCAGCACTAGACTTCAACATAG
AACGCATTCTATCTAAGGATTTATTTCAGTCTCAAGGAACTGCATCGTCTACCTTCGGCT
TCTTACCAGACATTGGTCATCAATTTTTGCATCCACCAAAACATTCTCAAGCTGCGTTGC
ACAGCATTGTAAATCCCGCTGATGCATTTGGAAGGGTAACAAATGCTCCGGTAGGATGTA
CATTCAAAGAAGCCACACATCAGGTTCCCAATAATTTCGATGGAGAGTTCCACAACGTCA
TTGGGATGCCTTTTACCCTTTTTAACGACCAAGAATCAAATGGTAAACCTTGAGCAATAG
ATTCCGCAACCGAAGCAAGAGATCATAACGGGCCATGAGATTTCAACAGAACAACATGTG
AGCTTGTTGACACTCTTCTACCAGCTCGCATTTGAGCACCGAAGTATAGCCGTCCAAATT
GCTTAACTGTTGATCTCCCAATACTGGAATCAGCACTTGATATCCTATAGAGGCCCTTT

Homology of Contig U35_20529 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g16400.2	438	8e-136	protein\|helix-loop-helix DNA-binding domain containing protein, expressed
Brachypodium v1_2	Bradi1g43650.1	442	8e-178
Arabidopsis v10	AT1G68920.1	486	3e-61	basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr1:25915620-25917675 FORWARD LENGTH=486