barSeed - Barley Seed Development Database

Probe CUST_15146_PI390587928

Source Contig U35_18212

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15146_PI390587928	Hv_44K_v2	ATCAAGAACTTCTGGAACAGCTGCATCAAGAAGAAGCTCCGCCAGCAAGGCCTGGACCCC	479	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371164	1065	2e-24	460 - 519	100	60 / 60	plus	ABC09252 ABC14337
MLOC	MLOC_23453.2	1269	2e-24	225 - 284	100	60 / 60	minus	ABC14337
MLOC	MLOC_23453.1	1242	2e-24	236 - 295	100	60 / 60	minus	ABC09252 ABC14337
MLOC	MLOC_13292.1	783	7e-23	272 - 331	98	59 / 60	plus	ABC14337
JLOC1	JLOC1_16204.1	1063	8e-25	756 - 815	100	60 / 60	plus
JLOC1	JLOC1_8980.1	1440	4e-23	559 - 618	98	59 / 60	minus
Harvest35	U35_18212	574	3e-25	480 - 539	100	60 / 60	plus

Contig Sequence (574 bp)

>U35_18212 574 Hv_44K_v2
TCGAGCACTGTTGGCCTCTGGAACCATCGATCGGTAGGAAGCAACCGTCGCTCCATCTTA
CCCATCGCCGTCACATCCATCCAATTCCAAGCTCGTCGGAGTTGCTCCGGCGCCAACAAC
AGCCGGGAAGATTAGGCGCACGCACGCTCGTCCGGCCGGCGTTAATGGGACGTCCGACGT
CTGGGGGCGCGGAGCAGCCCAAGCTCCGCAAGGGGCTGTGGTCGCCCGAGGAAGACGAGA
GGCTCTACAACCACATCATCCGGCACGGCGTCGGCTGCTGGACCTCCGTCCCCAGGCTCG
CCGGGCTGCACCGGTGCGGCAAGAGCTGCCGCCTCCGCTGGCTCAACTACCTCCGCCCCG
ACCTCAAGCGCGGCACCTTCTCGCAGCAGGAGGAGGACGACATCGTCGCGCTCCACCGGA
TCCTCGGCAACAGGTGGTCACAGATCGCGTCGCACCTGCCGGGCCGGACGGACAACGAGA
TCAAGAACTTCTGGAACAGCTGCATCAAGAAGAAGCTCCGCCAGCAAGGCCTGGACCCCG
CCACGCACAAGCCCATGGCCGCCGGCGCAGCCCC

Homology of Contig U35_18212 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46610.1	313	1e-83	protein\|myb-like DNA-binding domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g17982.1	279	2e-82
Arabidopsis v10	AT5G26660.1	352	9e-68	\| Symbols: ATMYB86, MYB86 \| myb domain protein 86 \| chr5:9331775-9333044 REVERSE LENGTH=352