barSeed - Barley Seed Development Database

Probe CUST_15145_PI390587928

Source Contig U35_18213

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15145_PI390587928	Hv_44K_v2	GCTGCTTAGTCACGGAGACGACATATAGCAATCAAACACTTGTAAAAAATAAGCACAAAC	1238	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76777.1	956	2e-24	34 - 93	100	60 / 60	minus	ABC14337
JLOC1	JLOC1_51202.2	1582	8e-25	1490 - 1549	100	60 / 60	plus
JLOC1	JLOC1_51202.1	1555	8e-25	1463 - 1522	100	60 / 60	plus
Harvest21	ABC14337	1286	3e-25	1202 - 1261	100	60 / 60	plus	ABC14337
Harvest35	U35_18213	1350	3e-25	1239 - 1298	100	60 / 60	plus

Contig Sequence (1350 bp)

>U35_18213 1350 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAACCGCCGGTCCATCACGCCGACCGCCATTGCCTCCGTC
CATCCACGCTGCTTGCCCAGCCCAGCTCATCATCCCGGAGCGGAATCAACTGATCGAATG
GGACGCCCGTCGTCCGGCGCCGTGGGGCAGCCCAAGGTCCGCAAGGGACTGTGGTCGCCC
GAGGAGGACGAGAAGCTCTACAACCACATCATCCGGCACGGCGTCGGCTGCTGGAGCTCC
GTCCCCAGGCTCGCCGCGCTGAACCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATCAAC
TACCTCCGCCCCGACCTCAAGCGCGGCTGCTTCTCCCAGCAGGAGGAGGACCACATCGTC
GCGCTCCACCAGATCCTCGGCAACAGGTGGTCTCAGATCGCGTCGCACCTGCCGGGCCGG
ACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCATCAAGAAGAAGCTCCGGCAGCAG
GGCATCGACCCGGCCACGCACAAGCCCATGGCCTCCGCGGACACGGCAACGGCAGCGGCC
GCATTGCCGGACGCAGAAGAGGAAGACCGTAAGCCCCTTTGCCCGGAGATCGACGGCAGC
CTCGTTCCGAAGCAGCCGGCGGTGTTCGACCCGTTCCCGCTGTGCGTCGACTACGGCGCC
GGGTTCGCCGAGGAACTCGGCGTGGCGAACGCTGCGGCATTGTATGGCCAGCTCTGCGGC
GGGAAGGAGGTCGCGGACGACGACGCCGGGTTCGGCGCCGCGGACTACAGCTGCGTGCTG
GACGTGTCGGAGAACCTGGGCTACGGGGAGAGCTCGAGCAACAGCAGCAACTGGAACTAC
GGCGGCGAGGTGGGCAGCGTGCTGGACGGCGAGGTGCCGCACTGGGCCAAGCCGGAGCCG
GCCTTCGCGGAGATGGAGAGGCAGCAGCAGCACTCACCGGCGGAGCAGAAGCTTTCGCTG
CCCTGCCAAGAACAGAGCCTCCTCGCAAGTTTCGATTTCAACCTGGAATTGGAACCATAC
TTCTGAAATTCCCCCCTCTTTTTTCCCTCCATTTTTCACCTTCTTGAATCATATCACGAT
TTCCAACCACGTATATTCACACGTCAACAGGATGGCAAGGATCCATCCGAAAGCCAATTA
GGGATTGTACGTAGAGTACAAACAAAGACACACGCTTGTTTGATTTTTCACAGAGACGAC
AATACGGTAAGTATGTCGTGGAACATTGTTGTGTAGGCGCTGCTTAGTCACGGAGACGAC
ATATAGCAATCAAACACTTGTAAAAAATAAGCACAAACATTTATATACATACTGGAGTAT
TACTTTGCATGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_18213 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46610.1	313	5e-95	protein\|myb-like DNA-binding domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g17982.1	279	3e-95
Arabidopsis v10	AT5G26660.1	352	1e-64	\| Symbols: ATMYB86, MYB86 \| myb domain protein 86 \| chr5:9331775-9333044 REVERSE LENGTH=352