barSeed - Barley Seed Development Database

Probe CUST_15117_PI390587928

Source Contig U35_18127

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15117_PI390587928	Hv_44K_v2	CGTGACAACATTTATGCTATGGAGAGAATGATTTGTTATGGTGATTACGATTTGTTGAGT	1153	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80711.2	1226	2e-24	1165 - 1224	100	60 / 60	plus	ABC08141 ABC38416
MLOC	MLOC_80711.1	4907	2e-24	177 - 236	100	60 / 60	minus	ABC08141 ABC21912 ABC38416
JLOC1	JLOC1_53740.1	2442	8e-25	2215 - 2274	100	60 / 60	plus
Harvest21	ABC38416	249	3e-25	36 - 95	100	60 / 60	minus	ABC38416
Harvest21	ABC08141	1246	3e-25	1154 - 1213	100	60 / 60	plus	ABC08141
Harvest35	U35_18127	1246	3e-25	1154 - 1213	100	60 / 60	plus

Contig Sequence (1246 bp)

>U35_18127 1246 Hv_44K_v2
GCAGACCCACCGATGGCCGTCGGCGAGGAGGTCAAGCTCTCCATCTCCGGCGCGGCCCTC
GCGGCGCTCCTCCACCGCTGCGGGGCCGCCGCGGGTGACTGCGACGGCCTCCTCTTCGGC
CGCGCCCACCGCCCCCCTCCGCCGGCTCCCACCCTTTCCGACTACGACGACCAAGCCCCC
GCCGCCCCGTGCCTTTTCATCTCCATCTCCGGCCACTCCTCCCTCTCCCACCCCTGCTCC
CTCTCAGATCCCCTCGGCCGCCCCCACCCGCCGCCGCCCTCCTCCCCTTGCCCTCTCGGC
TTCTTCTCGTCCCGCCGCCGCGCCCCTCTCCGCGCCTCCATGCGCGAGCTCGCCCTCGCC
TGCTCCCTGTCCAAAACCCTATCGCCCCTCGCCCACCCGCTCCTCGTCATCCTCGTCTCC
CCCAACACTTCCGACGACCTCTCCACCCACTCCTTCGACTACCGCGCTTTCCTCCTCGTC
GGATCCCGCCTCGTCCCGACCTCGCTCGCCGTCGTCAACGTCGGCCCCGGCTTCCGGGAT
CAGTACCACTCCTTCGCCCCGGAGTCGTCCTTCCCGTTGCTCACTCAGCCGTCGCCGCCG
GCGGCGCCCGAAGCAGAGGATGCTTACAGCATCGGAGAGCAGAAGAAGGTGGATGCGATG
GTGGACGGGTTTGGGCTAGGGAGGCTGCAAGAGCTCGTGGGTGCTGTGGCCGGGCAGGCC
GCGGGGATGGATAGCATGTATGCCGGGATGCTCCAGAGGATGGAGAAGCTCGCCAGGGAG
GTGGAGAAGAGCAATCACCGCGTGCTCGACCAGGAAAAGCGGAACCTGGTGCTGAGGTCC
AAGACAGCAGGACTGTAATAAAAGACCGAAGCTTCTTTCGGTCTCAGCAAGTGTGTATAT
GCTCCGGAATATCGGAGCAGCGTGTCTCCGGTTAGGGATTGATTCGTGCATTGCACGGCA
GTAGTTAATCCATTGGAGTGATGGCTCTCTAGGTGGTGTGCTCCATGGGTGGAGTTGGGA
GGACGGCTTGCCGTTCAGAAACCGATGGTGCTGGCAAAGTGCAGCGTTGAGTCATGGTCG
TCGTTGCCCTGCTTCTCCTATTCGTTTCTCTTGTGATTGAGCAGACTGAGTTGTAGTTTT
TCTTCAGACGCAGCGTGACAACATTTATGCTATGGAGAGAATGATTTGTTATGGTGATTA
CGATTTGTTGAGTTTTTTCTTTGAACTGAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18127 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35600.2	293	5e-94	protein\|expressed protein
Brachypodium v1_2	Bradi4g44770.1	298	1e-115
Arabidopsis v10	None