barSeed - Barley Seed Development Database

Probe CUST_15107_PI390587928

Source Contig U35_20447

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15107_PI390587928	Hv_44K_v2	ACTCCGCTTTTGTGAAGCCACCCTAGTGGTTTATATTAATTGGTTACAATAGTCAAAAAA	593	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54893.2	1419	9e-22	74 - 128	100	55 / 55	minus	ABC04424
MLOC	MLOC_54893.1	1373	9e-22	124 - 178	100	55 / 55	minus	ABC04424
JLOC1	JLOC1_35359.3	1414	5e-22	1250 - 1304	100	55 / 55	plus
Harvest35	U35_20447	714	3e-25	594 - 653	100	60 / 60	plus

Contig Sequence (714 bp)

>U35_20447 714 Hv_44K_v2
CCAGCCCCGATCTCTGCCGTCTTCAACCTCCCCCAGGCCAGCTCCAACGCCGCCACCCTC
ATCGACGTCTTCCAGACCCGCAACCTCGACAACGTGGACCTGGTCGCGCTCTCGGGCGGC
CACACCATCGGCAAGGGCCACTGCAGCTCCTTCTCCAACCGCTTCTCCGAGGACTCCGGC
TTCGTCCGAAGCCTCGCCTCCAACTGCTCCACCGACTTTAACCGGCTGCAGGACCTGGAC
GTGACCACCCCGGACGTGTTCGACAACAAGTACTTCACCAACCTGCAAGAGGGCAAGGGG
GTGTTCACCTCCGACCAGAAGCTCACCGCCGACTGGCGCACCGAATGGGTGGTCAACGGC
TTCGCCGGGAACCACTGGTGGTTCTTCGGCCAGTTTGCTGCCTCCATGACCAAGCTCGGG
AACCTCCAGGGGCCCCAAGGAAACGTCGGCGAGATCCGTCGCAACAGTTGCTTCGTGCGC
AATGCACAGAGCATCCTCACGACCACTAGCGATGAGGGCCTCTCCGCGTCCGTTTGAGAC
CACCGACGTTAGCGAGATTAGTGTTTTAATAAGAGTTCGCTGGCTAATGTAACACTCCGC
TTTTGTGAAGCCACCCTAGTGGTTTATATTAATTGGTTACAATAGTCAAAAAAAAAAAAA
AAAACACCAAATGGAAGGATCATCAACATATTTAGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20447 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59160.1	349	3e-91	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g27160.1	307	2e-51
Arabidopsis v10	None