barSeed - Barley Seed Development Database

Probe CUST_14976_PI390587928

Source Contig U35_49017

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14976_PI390587928	Hv_44K_v2	GATGACGACGACGACGATGATGAATCTTGTATGCCCATTGCGGATTTCGTGTCTTAATTT	3	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360389	2798	7e-23	2687 - 2747	98	60 / 61	plus	ABC00385 ABC00555 ABC00840 ABC37597
Harvest21	ABC50954	597	3e-25	4 - 63	100	60 / 60	minus
Harvest21	ABC00001	2720	1e-23	2608 - 2668	98	60 / 61	plus
Harvest21	ABC49417	308	6e-22	54 - 114	97	59 / 61	minus
Harvest21	ABC00941	712	6e-22	610 - 670	97	59 / 61	plus
Harvest35	U35_49017	597	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_15212	1377	1e-23	1275 - 1335	98	60 / 61	plus
Harvest35	U35_534	2781	6e-22	2670 - 2730	97	59 / 61	plus

Contig Sequence (597 bp)

>U35_49017 597 Hv_44K_v2
TGAAAATTAAGACACGAAATCCGCAATGGGCATACAAGATTCATCATCGTCGTCGTCGTC
ATCATCCATCTACAGGCAAAACATAACTCCCAATAAAGACATTAGGTGTCAGGACATCAA
CGGTCGTGATCCCAGCACGGCTCACAAAGGCACCAAAGAGAGCAAGGGACACCAAGGCAG
CCGAGCCAATTGCAAAGCCCTTTCCAATGGCAGCAGTTGTGTTTCCTGCAGCATCGAGAG
CATCAGTTCTTTCACGAATTCTGTGGCTCATGCCAGCCATTTCAGCAATGCCTCCAGCGT
TGTCACTGATAGGGCCATAGGCATCAATGGCAAGACCAGTAGCAATTGTGCTGAGCATTC
CAAGAGCAGCCACAGCAACACCATACATCGCAGCAAGGCTGAAGCTGAGGAAAATACTGA
AGGCAATGGCAAAGATAGGGATAATAACTGATTTGTATCCCAGAGCAAGACCAAAGATGA
CATTGGTAGCAGCTCCAGTTCTGCAGGAATCGGCGACATCCTGCACAGGACTGTATGCAT
TGCTTGTGTAGTACTCTGTAATGAATCCAATGACTAGGCCAGCCCAGAGACCAACAG

Homology of Contig U35_49017 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g09150.2	690	6e-87	protein\|inorganic H+ pyrophosphatase, putative, expressed
Brachypodium v1_2	Bradi1g30550.1	774	4e-89
Arabidopsis v10	AT1G15690.1	770	3e-86	\| Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 \| Inorganic H pyrophosphatase family protein \| chr1:5399115-5402185 FORWARD LENGTH=770