barSeed - Barley Seed Development Database

Probe CUST_14945_PI390587928

Source Contig U35_49029

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14945_PI390587928	Hv_44K_v2	TACAGTTGGCAATAGTCGGATATTCCGAGAGCCTTACCGACATATATGTCTCAGAGAGGA	330	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11897.2	3330	2e-23	2676 - 2733	100	58 / 58	plus	ABC13704 ABC21141 ABC26541 ABC50975
MLOC	MLOC_11897.1	1920	2e-23	1425 - 1482	100	58 / 58	plus	ABC13704 ABC21141 ABC26541 ABC50975
JLOC1	JLOC1_7933.6	2108	1e-23	1399 - 1456	100	58 / 58	plus
JLOC1	JLOC1_7933.5	1309	1e-23	600 - 657	100	58 / 58	plus
JLOC1	JLOC1_7933.4	2506	1e-23	1797 - 1854	100	58 / 58	plus
JLOC1	JLOC1_7933.3	1977	1e-23	1268 - 1325	100	58 / 58	plus
JLOC1	JLOC1_7933.2	2519	1e-23	1810 - 1867	100	58 / 58	plus
Harvest21	ABC50975	635	3e-25	331 - 390	100	60 / 60	minus	ABC50975
Harvest21	ABC13704	829	4e-24	460 - 517	100	58 / 58	minus	ABC13704
Harvest35	U35_49029	635	3e-25	331 - 390	100	60 / 60	minus
Harvest35	U35_20621	829	4e-24	313 - 370	100	58 / 58	plus

Contig Sequence (635 bp)

>U35_49029 635 Hv_44K_v2
TTAGGTAGCAGCTCTTTTGTCTTATTCTTTTGCTATGAGTACACAAGTGACAGATATGCT
ACTGTCTTCAGGAAAGGCCTGCATAATCAGCAGGTCCATATGGCTGGAACCATTCAGCGA
GGAATCCTTTCTTTCTTCTAGGATTGCATCCGATATCTTGGCACAACAAATCATTAAACC
AAATATTCACAGTGCTTAAACAAGATCGTCTAAAATACTTTCCATTGTAAAGATTCTTGT
ACTTTGCCCACTCTGCTACACTCCCTTCCATGCGTCTTATGCTTGGCAACTGGAAGCCAC
CAGCCAGGAAATGGATTACCCAATTAGCTATCCTCTCTGAGACATATATGTCGGTAAGGC
TCTCGGAATATCCGACTATTGCCAACTGTATAGTGGAACCGATGTATCTGATGATCCTGC
CACTATATTTCTGCACCAGTTTGCTGTGAAGATGTCCCTGAGCTTCTGGTCTCCTTTGAA
TCCTGTTGCTAGAATTACGATATCACTCTTTATGCTTTCTTCTCCATCCTCCAGGATGAT
CCCATCACTGCAGAAGCTGAACCGCTTGGATTTCTTAAGAATAATGCTGCCATCTTCAAC
CCTGTCATAAAACCCTTTNTGCAGCATTGCAATCA

Homology of Contig U35_49029 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37620.1	520	3e-85	protein\|flavin-containing monooxygenase family protein, putative, expressed
Brachypodium v1_2	Bradi4g37110.1	520	2e-87
Arabidopsis v10	None