barSeed - Barley Seed Development Database

Probe CUST_14939_PI390587928

Source Contig U35_25077

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14939_PI390587928	Hv_44K_v2	ACGGTTGTTGCTCAAGTGATTGGCTGGCTTTTATTTTTCCTTCACTTTTTATAGCAAAGG	375	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.171	3.423	1.179	0.607	0.153	0.150
Raw	769.043	980.927	294.644	242.167	21.171	23.269

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_24839.1	1301	2e-24	1006 - 1065	100	60 / 60	plus	None
MLOC	MLOC_24839.2	1383	2e-24	1006 - 1065	100	60 / 60	plus	None
MLOC	MLOC_24839.3	606	2e-24	539 - 598	100	60 / 60	plus	None
MLOC	MLOC_24839.5	550	2e-24	464 - 523	100	60 / 60	plus	None
MLOC	AK361875	1539	7e-23	1233 - 1293	98	60 / 61	plus	ABC13714
JLOC1	JLOC1_17056.1	909	8e-25	453 - 512	100	60 / 60	plus
Harvest35	U35_25077	522	3e-25	376 - 435	100	60 / 60	plus

Contig Sequence (522 bp)

>U35_25077 522 Hv_44K_v2
AGCATGCTGCGGTGGGGGAGGACCCTATGGTGTGTCCATGACTGCAAGATGTGGATATGG
AGAATACAAGGTGTGTGATGATCCACAAAAGTATGGATCATGGGATGGTTTCCATCCCTC
AGAAGCTGCATATAAGGGCATCGCAATTGGCCTTCTAAGAGGAACATACACACAGCCTTC
AATTTGTACCACCATCAGTTCATGTCCACAACTTACTGAACTCGGCTCTTCCGTTGAATA
CAAGGTCCTCTATGACTTGTAGCTGTAACTTATTTTTTTGTTGCTATTGATTAATTATAG
AAATATGTTTGGTTAGAGATGTACATATTGTGACATTTTGCCTAATTACAGAACTGCAGC
ACTGTTGTACACCTCACGGTTGTTGCTCAAGTGATTGGCTGGCTTTTATTTTTCCTTCAC
TTTTTATAGCAAAGGTTTTATACACTGTTATTCTGTTGATTCGCCCTCATTTTAATAAAT
TTTAATTCCTATAATTATTTGGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_25077 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g45207.2	403	6e-52
Arabidopsis v10	None