barSeed - Barley Seed Development Database

Probe CUST_14863_PI390587928

Source Contig U35_49064

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14863_PI390587928	Hv_44K_v2	CGAACCATGTTTGATTGAAATGTGCCAAGTTTGGATATGTTTGATAGTATTCATGATGTG	54	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73669.1	203	7e-23	109 - 168	98	59 / 60	plus	ABC06045 ABC06046 ABC06047
MLOC	AK252167.1	568	9e-22	462 - 519	98	57 / 58	plus	ABC06045 ABC06046 ABC06047 ABC07418 ABC49812
Harvest21	ABC06048	344	1e-23	254 - 313	98	59 / 60	plus
Harvest21	ABC06046	465	2e-22	377 - 434	98	57 / 58	plus	ABC06046
Harvest21	ABC06044	523	2e-22	409 - 466	98	57 / 58	plus
Harvest21	ABC06045	1447	6e-22	1331 - 1390	97	58 / 60	plus	ABC06045
Harvest35	U35_49064	351	3e-25	55 - 114	100	60 / 60	minus
Harvest35	U35_16587	720	1e-23	608 - 667	98	59 / 60	plus
Harvest35	U35_16586	465	2e-22	377 - 434	98	57 / 58	plus
Harvest35	U35_16584	523	2e-22	409 - 466	98	57 / 58	plus
Harvest35	U35_16585	1447	6e-22	1331 - 1390	97	58 / 60	plus

Contig Sequence (351 bp)

>U35_49064 351 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAATATGTCCAACAACCATTATAACTTGAACCTCCGTCACATC
ATGAATACTATCAAACATATCCAAACTTGGCACATTTCAATCAAACATGGTTCGCATCAA
GTTTACAATCAAAACTAGTTCACATTAGATAACACAACTAAAAAATCAAAACAATAGCTA
GCTCCAATGATCAAGAACTTTGTGCTTCGTCCTGGACCTTGCAACGAAACATGAATGAAG
GCCAACATTAGCAGAGGATGAAGAAGAGGCCCGAGAAGAAGCGCCAGCGGCCGGGCGAGA
GCGAGCGGCCGCAGCAAAAGCAGCGGCTGGCAACCATGGCCACGGCCTGCC

Homology of Contig U35_49064 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None