- Probe CUST_14856_PI390587928
- Source Contig U35_37093
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14856_PI390587928 | Hv_44K_v2 | TGTCCTTCCTCATGCCTCCGATCCGAAATATACATGGCGCCTCAGCTTTGATCCAAAAAA | 460 | GeneList: darkmagenta MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.395 | 1.928 | 0.563 | 0.706 | 0.873 | 1.428 |
| Raw | 57018.767 | 70145.100 | 19027.100 | 38241.233 | 15896.867 | 28775.233 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_43081.1 | 1379 | 2e-21 | 775 - 828 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC46918 | 438 | 3e-25 | 368 - 427 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32725 | 531 | 3e-25 | 461 - 520 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00046 | 821 | 1e-23 | 657 - 717 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC47930 | 580 | 6e-22 | 21 - 74 | 100 | 54 / 54 | minus | |
| Harvest21 | ABC34198 | 333 | 6e-22 | 260 - 313 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC00697 | 1766 | 6e-22 | 1693 - 1746 | 100 | 54 / 54 | plus | ABC00697 |
| Harvest21 | ABC00616 | 502 | 6e-22 | 429 - 482 | 100 | 54 / 54 | plus | ABC00616 |
| Harvest21 | ABC00611 | 465 | 6e-22 | 392 - 445 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC00162 | 382 | 6e-22 | 21 - 74 | 100 | 54 / 54 | minus | ABC00162 |
| Harvest21 | ABC00063 | 689 | 6e-22 | 559 - 612 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC00065 | 537 | 8e-21 | 439 - 492 | 98 | 53 / 54 | plus | |
| Harvest35 | U35_37093 | 531 | 3e-25 | 461 - 520 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_265 | 508 | 6e-22 | 434 - 487 | 100 | 54 / 54 | plus | |
| Harvest35 | U35_244 | 465 | 6e-22 | 392 - 445 | 100 | 54 / 54 | plus | |
| Harvest35 | U35_32 | 649 | 6e-22 | 521 - 574 | 100 | 54 / 54 | plus | |
| Harvest35 | U35_16 | 690 | 6e-22 | 521 - 574 | 100 | 54 / 54 | plus |
Contig Sequence (531 bp)
>U35_37093 531 Hv_44K_v2 GACAACAACCATTGCCCCAGCCCCAACAACCATTCCGCCAACAAGCAGAACTAATAATTC CCCAGCAACCTCAACAAGCATCCCCCCTACAACCGCAACAACCATTTCCCCAGGGATCAG AACAAATAATTCCCCAACAACCATGCCCACCGCCTCCCACAAGGGGAGCTCCGGCGGGTT CGAGATGGCCGGCGGGGAGACCGGCGGCTGCGACTGCGCCACCTGCAAGTGCGGCACCGC GTGCGGCTGCTCCTGCTGCAGCTGCAAGTGAGCCGGCGCCCGGGAGGCCGGCCGGCAGAG GCGAGCACGAGGATGAGAGGAGGACAAGCAACACCAACCAAGCACCATCACCATCGCCAT CGTATCATCAGTAGCCGCTGCATGCGCGCGCGCTGAATAAAATAAAACCGCCGTCGTGTT CGTTAGTTCTGTATGCCCTGCGTGTAGCGTTCGACCAGTGTGTCCTTCCTCATGCCTCCG ATCCGAAATATACATGGCGCCTCAGCTTTGATCCAAAAAAAAAAAAAAAAA
Homology of Contig U35_37093 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |