barSeed - Barley Seed Development Database

Probe CUST_14796_PI390587928

Source Contig U35_28862

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14796_PI390587928	Hv_44K_v2	GCAAAAATGATGGCAGAAGAAGCCCTTGGCTCTATGAAATCTGCTAATTCCTTGCAGAAG	533	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51141.12	6460	7e-23	2142 - 2201	98	59 / 60	minus	ABC08959 ABC41656
MLOC	MLOC_51141.5	7201	7e-23	2786 - 2845	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.11	6622	7e-23	2303 - 2362	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.3	7988	7e-23	7602 - 7661	98	59 / 60	minus	ABC08959 ABC18762 ABC47652
MLOC	MLOC_51141.7	6871	7e-23	2555 - 2614	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.8	7002	7e-23	2587 - 2646	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.9	7007	7e-23	2592 - 2651	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.6	6944	7e-23	2625 - 2684	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
MLOC	MLOC_51141.10	4283	7e-23	2318 - 2377	98	59 / 60	minus	ABC08959 ABC41656 ABC47652
JLOC1	JLOC1_32644.3	6930	4e-23	4258 - 4317	98	59 / 60	plus
JLOC1	JLOC1_32644.2	6724	4e-23	4052 - 4111	98	59 / 60	plus
JLOC1	JLOC1_32644.1	6625	4e-23	3842 - 3901	98	59 / 60	plus
Harvest21	ABC27956	601	3e-25	534 - 593	100	60 / 60	plus
Harvest35	U35_28862	601	3e-25	534 - 593	100	60 / 60	plus

Contig Sequence (601 bp)

>U35_28862 601 Hv_44K_v2
GGGCTGGAGCCGCATCACCAAAGCCAAGAAAAAGAAAGAAAGCTTCAGTAAGTCAAGAAC
AGCAACCTGACATTGCTTCCTCTCAGCTCAACACGGATGTTGCATCATCCCAGCTCAAAA
CAGACATTGGATCTGTTATTCCTGCCACTGAGCAGACACCAGGCTTCACCTTATCTACTC
GTTCTCCAAGTAATGTTCTGGGTAGCCGGCTTGTTCCTAACGCAAGTTTGATCACATCTG
TGCCTAACTACCTGGGTGGTAAGGGTGCTGAGCAAAGAATTATCTTTTCAGAACAGATCA
GTGGTGCAGTGGACCAATCTATGGACCAAGCCAGAGGTGCAAGCATGTACTCTGAGGAGG
CACTTAGGCACAGTGAAGGTGTGTGGAACCAGTTATCCGCAAACTCAAGGAGCAAATTAC
CTGCAGAAGTAGAACAAAAGCTTACTTCAGCAGCTGCTTCTGCTTCCGCAGCAGTTTCTG
TTGCGAAGGCTGCTGCAGAAGCTGCTAAAATGGCGTCGGCTGCTGCATTGCAGGCAAAAA
TGATGGCAGAAGAAGCCCTTGGCTCTATGAAATCTGCTAATTCCTTGCAGAAGCGTGACA
C

Homology of Contig U35_28862 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None