barSeed - Barley Seed Development Database

Probe CUST_14784_PI390587928

Source Contig U35_16895

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14784_PI390587928	Hv_44K_v2	CTGTGTTCCCGCTGGTAAAGAATCAAGAGTTTGATGATGCTGCCAAAGTGCTTGCTAAAG	1922	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34374.1	2182	7e-23	1876 - 1935	98	59 / 60	plus	ABC06501 ABC06502
MLOC	MLOC_34374.3	2107	7e-23	1199 - 1258	98	59 / 60	plus	ABC06501 ABC06502
MLOC	MLOC_34374.2	2337	7e-23	1779 - 1838	98	59 / 60	plus	ABC06501 ABC06502
JLOC1	JLOC1_22158.1	4207	4e-23	1779 - 1838	98	59 / 60	plus
Harvest21	ABC06502	2182	3e-25	1603 - 1662	100	60 / 60	plus	ABC06502
Harvest35	U35_16895	2502	3e-25	1923 - 1982	100	60 / 60	plus

Contig Sequence (2502 bp)

>U35_16895 2502 Hv_44K_v2
GCCCCCCCGACCCCGCATCGCTGCTATCCGCCTGTCGATGGTGTTTATGCGATTCCGCCC
CCAGCTTATCGCCTCCTCCCTCTCCCGAGCCCCTAAACCCAGCAGAACCCTAGCCCCACA
GCCCCTCGCCGCCGCCGCCGCGCGCCGCCACTCCCTCACCGCGACCCTCTCCTTCTCCTC
CTCCATGGCCGGGGCAGCACCCTCGGAGGAAGCGCTCCGCCGGGCGCTGGCGGAGAGGCA
GGCGGCAGTGGACGCGCAGGCCGAGGCCGTGCGGTCCCTCAAGGCCTCCGGCGCCAAGGC
GGGGGTCGACGCGGCGGTCGAGGCGCTGAAGGCGCTCAAGATCGAGGCTGGCGCTGCTGC
GCGCAGGCTGCAGGCCTCCGTCGGGTCCGGCGGCGGCGCCGCTCGGGAGGAGATGCGGCA
GGCAGTGGTGAACACCCTCGAGCGGAAGCTCTTCTACATACCGTCGTTCAAGATCTACCG
CGGCGTCGCCGGCCTGTACGACTACGGGCCGCCGGGGTGTGCGGTCAAGTCCAACGTCCT
GGCCTTCTGGAGGCAGCATTTTGTTTTGGAGGAGAATATGTTGGAGGTCGACTGCCCCTG
TGTGACACCTGAGGTTGTCTTGAAGGCATCAGGGCATGTCGAGAAGTTCACCGACCTCAT
GGTTAAGGATGAAAAGACAGGCACCTGCTATCGTGCTGATCACCTGTTGAAAGATTTCTG
CAAGGACAAGCTTGAGAAGGATCTCACCTTGTCCCCTGAGACGGCTGCCGAGTTTAAGCG
CGTCCTTGCTGTGTTAGATGACCTCTCACCAGAGGAACTCGGTGCAAAGATCAAGGAATA
TGGCATTGTTGCCCCTGATACAAAGAACCCACTCTCTGCTCCCTATCCATTCAATCTTAT
GTTCCAGACATCAATTGGCCCAACAGGTCTTAGCGTGGGCTATATGAGGCCAGAGACTGC
ACAGGGTATTTTTGTCAACTTCAAGGACTTGTACTACTACAATGGCCAAAAACTTCCCTT
TGCAGCAGCTCAAATTGGTCAAGCATTCCGTAACGAGATCTCTCCGCGTCAAGGTCTTCT
ACGAGTGCGTGAATTCACATTGGCCGAGATTGAGCACTTTGTAGATCCTGAGGATAAGTC
ACATCCCAAGTTTGTTGATGTTGCTGATTTGGAGTTTTTGATGTTTCCGAGAGAGCTGCA
ACTCTCAGGGGAGTCGGCCAAGTTAACGAAGCTTGCGGAAGCAGTTTCGAAGGGAACTGT
TAATAATGAGACACTTGGTTACTTTATTGGAAGGGTCTATCTTTTCCTGACACGTTTGGG
AATTGATAAGTGCCGATTGCGCTTCAGACAGCATCTACCTAATGAGATGGCTCATTATGC
CGCTGACTGCTGGGATGCGGAGATTGAGTGTTCTTATGGATGGATAGAGTGTGTGGGCAT
TGCAGATAGATCTGCATATGATTTAAAAGCTCATTCTGAGAAAAGTGGTGTTCCACTTGT
TGCTCATGAAAAGTTTTCAAAGCCTAGAGAAGTTGAGAAACTTGTTATCGTGCCCTCAAA
GAAAGACCTAGGGCTTGCTTTCAAGGGCAATCAGAAGATGGTGGTTGAAGCATTGGAGGC
TATGAGTGAGAAGGAAGCAATGGACATGAAGGCTGCATTGGAATCTAAGGGGGAGATGAA
CTTCCAAGTTTGCACACTTGGAAAGGACGTGGTGATTACAAAGAAAATGGTATCGATCAG
TATGGAGAAGAAGGTGGAGCACCAGCGAGTCTTCACCCCTTCAGTTGTTGAACCCTCATT
TGGCATAGGGAGGATAATCTATTGTCTGTTTGAACATTCCTTCTACACAAGACCTAGCAA
ATCAGAAGAGGAACAGCTGAACGTCTTCCGGTTCCCTCCTATCGTGGCTCCTATCAAGTG
CACTGTGTTCCCGCTGGTAAAGAATCAAGAGTTTGATGATGCTGCCAAAGTGCTTGCTAA
AGAATTAACAGCTGCAGGCATCTCACACATTATTGACACGACTGGCATTTCTATCGGGAG
GAGGTATGCAAGGACGGACGAGATCGGTGTTCCTTTTGCAGTAACGGTCGATTCTGCAAC
GGAGGTGACAATCCGAGAGAGGGACAGCAAGCAGCAGGTGAGGGTGGGCATTGACGAGGT
GGCATCGGTGGTGAAGGAGCTGACAGAAGGACAAAGCACGTGGACCGATATCTCATTCAA
GTATCCCAGCCATATCGGTCCCCAAGCTGACCAAGAGTGAGTTGTCTAGCTACAGTTTGC
ACCGACCCCGTCCAGACCATCAAAACGTCATTCATCTTCCAGTTGCCCGGTTGAAACCGT
ACTGCTGTTGATGCGAGCTCTGTATGAATACTTGCTGCAGACGCCTATACATTTTGAGAA
TGTTTTAGCATATACATACAATGGAATTGACATCATTTTGAGTATTCCTTAAGGAGTAAG
TTAAGTTGTAATGAAGCTATTGAATTTTCAATCTTTCACCTA

Homology of Contig U35_16895 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g42560.1	741	protein\|tRNA synthetase class II core domain containing protein, expressed
Brachypodium v1_2	Bradi3g41550.1	692
Arabidopsis v10	AT1G29880.1	729	glycyl-tRNA synthetase / glycine--tRNA ligase \| chr1:10459662-10462781 REVERSE LENGTH=729