barSeed - Barley Seed Development Database

Probe CUST_14783_PI390587928

Source Contig U35_16896

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14783_PI390587928	Hv_44K_v2	GAGTGGAATTGACATCATTTTGAGTATTCCTTAAGGAGTAAGTTGTAATGAAGCCTATTG	550	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34374.3	2107	3e-22	2007 - 2065	98	59 / 60	plus	ABC06501 ABC06502
JLOC1	JLOC1_22158.1	4207	1e-22	2357 - 2415	98	59 / 60	plus
Harvest21	ABC06501	641	3e-25	551 - 610	100	60 / 60	plus	ABC06501
Harvest35	U35_16896	641	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_16896 641 Hv_44K_v2
GTTTGATGATGCCGCCAAAGTGCTTGCTAAAGAATTAACAGCCGCAGGCATCTCACACAT
TATTGACACGACTGGCATTTCTATCGGGAGGAGGTATGCAAGGACGGACGAGATCGGTGT
TCCTTTTGCAGTAACGGTCGATTCTGCAACGGAGGTGACGATCCGAGAGAGGGACAGCAA
GCAGCAGGTGAGGGTGGGCATCGACGAGGTGGCATCGGTGGTGAAGGAGCTGACAGAAGG
ACAAAGCACGTGGACCGATATCTCATTCAAGTATCCCAGCCATATCGGTCCCCAAGCTGA
CCAGGAGTGAGTTGTCTGGCTACAGTTTGCACCGACCCCGTCCAGACCATCAAAACGTCA
TTCATCTTCCAGTTGCCCGGTTGAAACCGTACTGCTGTTGATGCGAGCTCTGTATGAATA
CTTGCTGCAGACGCCTATACATTTTGAGAATGTTTTACCATATACTCCCTCTGTCTCAAA
ATAACTGTCTCAACTTTGTATTAGCTTTATTATAAATTTGTACTAAGCTTAAGACACTTA
TTTTGGGACGGAGTGGAATTGACATCATTTTGAGTATTCCTTAAGGAGTAAGTTGTAATG
AAGCCTATTGAATTTTCAATTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16896 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g42560.1	741	1e-52	protein\|tRNA synthetase class II core domain containing protein, expressed
Brachypodium v1_2	Bradi3g41550.1	692	5e-57
Arabidopsis v10	None