- Probe CUST_14776_PI390587928
- Source Contig U35_28876
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14776_PI390587928 | Hv_44K_v2 | CAACTGGAATGTTGACAAGTCTAGAAAAATGCTGGAAGAAAGTCTCAAGTGGAGGGCAGC | 499 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.469 | 0.384 | 1.074 | 1.553 | 1.250 | 1.727 |
| Raw | 3.783 | 2.719 | 16.431 | 38.224 | 10.234 | 15.441 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_70444.1 | 1479 | 2e-24 | 651 - 710 | 100 | 60 / 60 | plus | ABC06082 ABC06083 ABC06085 |
| MLOC | MLOC_70444.2 | 1389 | 2e-24 | 561 - 620 | 100 | 60 / 60 | plus | ABC06082 ABC06083 ABC06085 |
| MLOC | AK250907.1 | 1433 | 3e-21 | 517 - 573 | 98 | 56 / 57 | plus | ABC06082 ABC06083 ABC06085 |
| MLOC | MLOC_67500.3 | 769 | 3e-21 | 527 - 583 | 98 | 56 / 57 | minus | ABC06082 ABC06083 ABC06085 |
| MLOC | MLOC_67500.2 | 1063 | 3e-21 | 603 - 659 | 98 | 56 / 57 | minus | ABC06082 ABC06083 ABC06085 |
| MLOC | MLOC_67500.1 | 1277 | 3e-21 | 792 - 848 | 98 | 56 / 57 | minus | ABC06082 ABC06083 ABC06085 |
| JLOC1 | JLOC1_46750.2 | 1518 | 8e-25 | 449 - 508 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46750.1 | 1608 | 8e-25 | 539 - 598 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44577.2 | 1247 | 2e-21 | 252 - 308 | 98 | 56 / 57 | plus | |
| JLOC1 | JLOC1_44577.1 | 1153 | 2e-21 | 188 - 244 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC27976 | 559 | 3e-25 | 500 - 559 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06081 | 1180 | 3e-25 | 348 - 407 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28876 | 559 | 3e-25 | 500 - 559 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2460 | 1283 | 3e-25 | 348 - 407 | 100 | 60 / 60 | plus |
Contig Sequence (559 bp)
>U35_28876 559 Hv_44K_v2 GCGCGTGATTTCCACAGGTTCATTTCCACGCCGTCGTTTCGGCGTTGCTTCCCCGACCCA GCTCCCCCTCCCTCCCTCCCTCCCTCTCTCTCTTCCGATTGATTATTCTTGCGCTCCCTA TTCCCTACCCGATAGCTCGGTCAGGATTCAGGAGGAGAAAAGTCGGGTCCAACCCTCTCT CGGCATCTCTCTCTCTTTTTAACGCCTGTCCAGCCAGGTCTCCCCGCCATTGCGTCAGGG GCTCTCACATCCCCGGTTCTTGGACGTAGTCCAAGGGCTGGTTCGTCTTCCTGACGCTCC CGCCGAGATCGATCCTGGTTGAGCATCACTGAGTTAAAGAGAACATGTTTCGGAAAAAGC AAGCTTCTCATTTTGATTCAGATGATGCTGAGCAGAGACAAGCAAAGATCAAGGAACTGA GAGCTGCTCTTGGGCCTTTATCTGGCCGTGGAGAGAAATATTGCGATGAAGCATGCTTGA TAAGATATCTTGAGGCCCGCAACTGGAATGTTGACAAGTCTAGAAAAATGCTGGAAGAAA GTCTCAAGTGGAGGGCAGC
Homology of Contig U35_28876 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |