- Probe CUST_14774_PI390587928
- Source Contig U35_28878
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14774_PI390587928 | Hv_44K_v2 | TCGAGCAAGAAGACGATGGAGATCAACCCTGAGAACGCCATCATGGAGGAGCTGCGCAAG | 613 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355136 | 2539 | 2e-24 | 1935 - 1994 | 100 | 60 / 60 | plus | ABC01204 ABC01205 ABC01206 ABC01207 ABC01213 ABC47677 ABC49921 |
| MLOC | MLOC_18664.1 | 2006 | 2e-24 | 910 - 969 | 100 | 60 / 60 | minus | ABC01204 ABC01205 ABC01206 ABC01207 ABC01213 ABC47677 ABC49921 |
| MLOC | MLOC_18664.3 | 1381 | 2e-24 | 285 - 344 | 100 | 60 / 60 | minus | ABC01204 ABC01205 ABC01206 ABC01207 ABC01213 ABC47677 ABC49921 |
| MLOC | MLOC_18664.2 | 1456 | 2e-24 | 360 - 419 | 100 | 60 / 60 | minus | ABC01204 ABC01205 ABC01206 ABC01207 ABC01213 ABC47677 ABC49921 |
| JLOC1 | JLOC1_12920.1 | 1658 | 8e-25 | 570 - 629 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_12921.1 | 2823 | 8e-25 | 1847 - 1906 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC27983 | 677 | 3e-25 | 614 - 673 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01207 | 866 | 3e-25 | 563 - 622 | 100 | 60 / 60 | minus | ABC01207 |
| Harvest21 | ABC01206 | 2566 | 3e-25 | 1969 - 2028 | 100 | 60 / 60 | plus | ABC01206 |
| Harvest35 | U35_28878 | 677 | 3e-25 | 614 - 673 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14120 | 2598 | 3e-25 | 1969 - 2028 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14117 | 859 | 3e-25 | 243 - 302 | 100 | 60 / 60 | plus |
Contig Sequence (677 bp)
>U35_28878 677 Hv_44K_v2 GGGAGGTTTCTCACGAGTGGAACCTGATCAACAAGCAGAAGCCTATCTGGATGAGGAAGC CTGAGGAGATCACCAAGGATGAGTATGCTGCCTTCTACAAGAGCCTGACAAACGACTGGG AGGAGCACCTTGCCGTCAAGCACTTCTCTGTGGAGGGTCAGCTTGAGTTCAAGGCCGTCC TCTTTGTTCCCAGAACGACATCTACTACATCACCGGTGAGAGCAAGAAGGCTGTGGAGAA CTCTCCCTTCCTTGAGAAGCTGAAGAAGAAGGGCTACGAGGTGCTGTACATGGTTGACGC CATTGATGAGTACTCCATTGGCCAGCTCAAGGAGTTTGAGGGAAAGAAGCTGGTCTCTGC CACCAAGGAGGGCCTCAAGCTTGACGACAGCGAGGAAGAGAAGAAAAGGAAGGAGGAGCT CAAGGAGAAGTTTGAGGGGCTCTGCAAGGTGATCAAGGATGTGCTGGGTGACAGGGTCGA GAAGGTTATTGTCTCTGACCGCGTCGTTGACTCTCCATGCTGCCTCGTCACGGGCGAGTA CGGCTGGACTGCCAACATGGAGAGGATCATGAAGGCCCAGGCCCTGAGGGACACGAGCAT GGGCGGCTACATGTCGAGCAAGAAGACGATGGAGATCAACCCTGAGAACGCCATCATGGA GGAGCTGCGCAAGCGCG
Homology of Contig U35_28878 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g39140.3 | 615 | 4e-77 | protein|heat shock protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g39620.1 | 700 | 3e-78 | |
| Arabidopsis v10 | AT5G56010.1 | 699 | 5e-76 | | Symbols: HSP81-3, Hsp81.3, AtHsp90-3, AtHsp90.3 | heat shock protein 81-3 | chr5:22681410-22683911 FORWARD LENGTH=699 |