barSeed - Barley Seed Development Database

Probe CUST_14721_PI390587928

Source Contig U35_3231

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14721_PI390587928	Hv_44K_v2	ATTTCAAGCTTGCTGATGTACCAGAAGAGAATGCCAACGGGAAGCATGAACATGTCGTCA	551	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372189	1553	2e-24	519 - 578	100	60 / 60	plus	ABC05122 ABC08931
MLOC	MLOC_60310.1	1815	2e-24	740 - 799	100	60 / 60	plus	ABC05122 ABC08931
JLOC1	JLOC1_39316.1	1866	8e-25	644 - 703	100	60 / 60	plus
Harvest21	ABC08931	1645	3e-25	548 - 607	100	60 / 60	plus	ABC08931
Harvest35	U35_3231	1027	3e-25	552 - 611	100	60 / 60	plus

Contig Sequence (1027 bp)

>U35_3231 1027 Hv_44K_v2
GCTCAACTCACGCGCTCTCCTCCTTGCCCCCCAACTTGCCTAACCAAACCTCCACCCCTA
CCAGCCCCAAGCCAGATCTCCACCCATCGCGCCGGAGCGAGCCATGGCGTTCGACGCCTT
CACCGACAAGACCGCCGTCTTCCGCCGCCTCAAGGCCAAGCCCGAGAACAAGATGTGCTT
CGACTGCAACGCCAAGAACCCCACCTGGGCCTCCGTCACCTACGGCATCTTCCTCTGCCT
CGACTGCTCCGCCTTCCACCGCAGCCTCGGAGTACACATCACATTCGTCAGGTCAACGAA
CCTGGACTCATGGACTCCGGATCAGCTAAAGATGATGGCTTTTGGAGGCAACAATCGTGC
ACATGCCTTCTTTAAACAGCATGGGTGGACAGAGGGCAGTGGCAAAGTCGATTCAAAGTA
CACATCAAGGGCTGCTGAATTATACAGGCAGATACTGCAAAAGGAAGTTGCTAAGAGCTC
CACCGTCAACGTCTTGCCATCATCCCCTGTTGCAGCGTCTCAACCAGCTAACCCGTCCGA
CGACTTCCCTGATTTCAAGCTTGCTGATGTACCAGAAGAGAATGCCAACGGGAAGCATGA
ACATGTCGTCACCAATCCACCAAAAGAGCCTGCCCAGGCACCAAAAGTCCCGACACACCC
CACTTATGTCAGTTCTGTAAAGAAGCCCCTTGGTGCAAAGAAGCTTGGTGCCAAGACTGG
AGGACTTGGTGTAAAAAAGCTCACTACAAAGTCAAATGAAAGCCTGTATGATCAGAAACC
TGAAGAGCCGAAACCTGTTTTACCAACAATGACGACTACTTCAGCTGCAAAAAGTGGCCC
ATCCTCGCATTCACGTTTTCAGTATGTGGAAAATGAGACATCAACTGAGTCAAAAACTGG
AGGAGGCAACAAGACTGGCCATGTAGCAGCACCAAAAACCTCAGACTTCTTTCACGAGTA
TGGAATGGATAATGGCTTCCAAAGGAAAACAAACGCAGCTGCCTCAAAGACTCAGATAGA
GGAAACT

Homology of Contig U35_3231 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63710.2	385	2e-161	protein\|GTPase-activating protein, putative, expressed
Brachypodium v1_2	Bradi1g01090.1	413	1e-172
Arabidopsis v10	AT5G46750.1	402	1e-90	\| Symbols: AGD9 \| ARF-GAP domain 9 \| chr5:18969950-18971817 REVERSE LENGTH=402