barSeed - Barley Seed Development Database

Probe CUST_14649_PI390587928

Source Contig U35_10566

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14649_PI390587928	Hv_44K_v2	ACAGGCTCTTTCAAGGAGGAGAGCAACCTCGTCGCCGACCTGCCTGACCCGGAGAAGAAG	274	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356601	2264	2e-24	383 - 442	100	60 / 60	plus	ABC08282 ABC15559 ABC22451 ABC46891 ABC46892
MLOC	MLOC_212.1	2573	2e-24	570 - 629	100	60 / 60	plus	ABC08282 ABC15559 ABC22451 ABC46891 ABC46892
JLOC1	JLOC1_144.1	2471	8e-25	449 - 508	100	60 / 60	plus
Harvest21	ABC22451	814	3e-25	275 - 334	100	60 / 60	plus	ABC22451
Harvest35	U35_10566	814	3e-25	275 - 334	100	60 / 60	plus

Contig Sequence (814 bp)

>U35_10566 814 Hv_44K_v2
AGCTTTCTCTCTCTACCTCCCTCCCTCCCTACCGTGCTCTCCCCCCTCTCTCTCTCCTGC
TCTGTCTTTCTTTCTTCACCGCAAAAGCTTGAAGCAGCTCGCGGAGATGGCAGAGGAGCC
GCAGCCGCAGGCCGCCGCCCCCGAGGTGGTCGTCGCCGAGAAGGCGCCGGCGGAGGTGGA
GAAGAAGGCCGAGGAGCCTGCCGCGACGGACGCGGCGGAGGCCGAGGCCGAGGAGACGGC
CGCCGTCGCCGACGATGGCGGCGCCGTCGAGGCCACAGGCTCTTTCAAGGAGGAGAGCAA
CCTCGTCGCCGACCTGCCTGACCCGGAGAAGAAGGCGCTCGACGAGTTCAAGGAGCTGAT
CGTCGCCGCGCTCGCCGCCGGTGAGTTCAACCTGCCCCCTCCCCCGCCGCCGCCGAAGGC
CAAGGCTGAGGCCGCCGCAGAGGAGACCAAGACGGAGGCGCCCGCCAAGGAAGAGGCCAA
GATCGAGGAGCCGGCCAAGGCGGAAGAACCAGCCAAGGAGGAGCCCAAGGCCGACGAGCC
GGCCAAGGAGGAGCCCAAGGCCGAGGTGGCGGCGGAGCCAGCAGCCGAAGAGGCCAAAGC
TGAGGTCGCTGCCGTGGCAGCCGCCGAGGAGCCTGCCAAGGAGGAACCCAAGGCCGAGGA
GGAACCCAAGGCCGAGGAGGACAAGCCGGCCGAGCCAAAGAAGGAGGTGGAAGCCGCCGT
CGTGGTCGCCGAGGAGGGCACCAAGACGGCGGAACCGGTCGAGGAAGTCGCCGCCACCAC
AGAGCAGGCACCGGCGGCGGAAGCGGAGGCGGAG

Homology of Contig U35_10566 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None