barSeed - Barley Seed Development Database

Probe CUST_14583_PI390587928

Source Contig U35_8756

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14583_PI390587928	Hv_44K_v2	TTTATGACAAATCCTCTGTAACACTCTGCTCCTTACTTTTAAAGAGCCCCATATTCAACT	904	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_31030.1	231	9e-22	60 - 117	98	58 / 59	minus	ABC17359
Harvest21	ABC17359	964	3e-25	905 - 964	100	60 / 60	plus	ABC17359
Harvest35	U35_8756	964	3e-25	905 - 964	100	60 / 60	plus

Contig Sequence (964 bp)

>U35_8756 964 Hv_44K_v2
TGTCCATCTCAGAACTACTACCTCAGAGCAAACCATGTAATTTGAATATTCATGCATCTA
TTGGCAAAATTGTCTTAATGGGTTCTCTTAGACCTGAATTGAAGGGGCAATTGCCAGTCA
TTGAGAAACATTCCTTGAATGGACATAATGATATCGTCAGAGATTTTATTACTACTGGAT
GCAAGTTATGTGGTTTACCTCTATACCAAAAGAATCTTCATGGAGACAGTACTTATCCAA
TCGATTGCCCTGATAATCCAAAGTACCTCCATGTTGTTGGCCAGATATATAAACCATTCA
TGATCTATGTGCAAGACCAAACTGGACAAGTTCCTGTGCTTGTGAAGAATAAAGTTGCCG
AGATTCTATTTTCAAATATCAATGCAGATGATGTGTCTGAATGCTACAAGAGCCGCCACT
GCATGCTGGTAGATACTTGTGACTCTGGCCAGTCAAGCACTTGTGGGATGCTAGATGGCA
GTGGCAAGACAGGCATTGCTAAAAGGAAAAGAACCAAACATAAGCTTGATTTTCATCTTA
TCTGGCTCATTGTTATGAAATGCCTGCTGAACCAAGGCAAGAACAGTCCATTCTGCTTCC
AGATTTCAGTCAACCCCGGGAGAAATGTTGAGGATGGACGATTTGAACTGATTTCGTTGA
TAATGCCAATACCATGAGATGGGAATTCTTCTTTTACCACCTATCTCAAACCAAACTAAT
GGTTATTATGTGCCTCTGCAAAAGGAATTGAAGGTCTGTTTTTCACAGGTGATTGCTGAG
TACACTAGAGGTGCTTTGGTGTTCCCATGGTTTGTACAGCGACATGGTTAGGACGACAGA
AATATTAGACCACTAATCTTCAGTTTTAGCAGGATCAACTTAGCAGAAGCAAAGACCTAG
CACATTTATGACAAATCCTCTGTAACACTCTGCTCCTTACTTTTAAAGAGCCCCATATTC
AACT

Homology of Contig U35_8756 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g37750.1	252	9e-104	protein\|expressed protein
Brachypodium v1_2	Bradi5g11887.1	400	3e-116
Arabidopsis v10	None