barSeed - Barley Seed Development Database

Probe CUST_14529_PI390587928

Source Contig U35_13815

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14529_PI390587928	Hv_44K_v2	GTAATATTCCCATTTATCGAATGAAATGCAAAGGAGCTCGGTGAAGCATCAAAATGCAAA	1066	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5315.3	1870	2e-23	1800 - 1857	100	58 / 58	plus	ABC02893 ABC02895 ABC10536
MLOC	MLOC_5315.1	3070	2e-23	2924 - 2981	100	58 / 58	plus	ABC02893 ABC02895 ABC10536
MLOC	MLOC_5315.2	2152	2e-23	2006 - 2063	100	58 / 58	plus	ABC02893 ABC02895 ABC10536
JLOC1	JLOC1_3410.4	2386	1e-23	2244 - 2301	100	58 / 58	plus
JLOC1	JLOC1_3410.3	2201	1e-23	2059 - 2116	100	58 / 58	plus
JLOC1	JLOC1_3410.2	2977	1e-23	2835 - 2892	100	58 / 58	plus
JLOC1	JLOC1_3410.1	3035	1e-23	2893 - 2950	100	58 / 58	plus
Harvest35	U35_13815	1140	3e-25	1067 - 1126	100	60 / 60	plus

Contig Sequence (1140 bp)

>U35_13815 1140 Hv_44K_v2
GTCGGAATCCTTTGAGGAGCAAAGGTGGTGTCTGGTTAGGAGCAAAGTATGTGGTACCAA
CGTGTGCAGTCTCCTCTGCTAGGCCAGTGTCACAGCCTAGGTTCATACAGCACAAGAAGG
AGGCCTTCTGGTTCTACAGGTTTCTTTCTGTAGTATATGACCATGTTATAAACCCAGGGC
ATTGGACTGAGGACATGAGGGATGATGCGTTGGAACCCGCTGAACTCTACAACAATGAGT
TCAAGGTTGTTGATGTTGGCGGTGGAACTGGGTTCACTACATTGGGGATTGTCAAGCATG
TGGACAACGACAATGTGACCCTGCTGGACCAGTCACCACACCAGATTGAGAAGGCTCGGC
AGAAGGAGGCACTGAAGGGGGTGAGCATCATGGAGGGTGATGCTGAGGACCTCCCTTTTC
CAACTGACACGTTTGACCGCTATGTCTCCGCTGGAAGCATTGAGTATTGGCCTGACCCGC
AGCGAGGAATCAAGGAAGCTTACAGGGTCGTGAAGCCTGGCGGGCTTGCCTGTTTGATCG
GTCCAGTTCACCCAACATTTTGGCTATCTCGCTTCTTCGCCGACATGTGGATGCTCTTCC
CCACGGAAGAAGAGTACATAGAGTGGTTCACCAAGGCAGGGTTCGAGGATGTCAAGCTCA
AAAGGATCGGGCCCAAGTGGTACCGCGGTGTTCGTCGGCATGGCCTAATCATGGGATGCT
CCGTGACAGGCGTAAAGAGAGCTTCTGGCGATTCCCCTTTGCAGCTCGGTCCCAAAGCTG
AGGATGTTGAGGAACCGGTGAATCTTCTTGCCTTCCTCTTCCGCTTCGCCATCGGGACGA
TATGCGCGTCGTACTACGTGCTAGTGCCTATCTACATGTGGATCAAGGATCAGGTTGTTC
CCAAAGGCCAGCCTATTTAGGCGATAGTAGTGAAGATAGGCTTCTATGTTAGCCACCCGT
AGTGCTTGCGGTTCCCTACTCATGTATGTTTGTGCTTTTCTTTTCGCCGGAATCTTGTTT
ATGCAAAGGGACTTTGTGCACTTGCGGAATTGTAGAAGCTAGGGATGTAATATTCCCATT
TATCGAATGAAATGCAAAGGAGCTCGGTGAAGCATCAAAATGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13815 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g08200.1	331	0.0	protein\|methyltransferase domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g01640.1	351	6e-180
Arabidopsis v10	AT3G63410.1	338	2e-160	\| Symbols: APG1, VTE3, IEP37, E37 \| S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:23415816-23417002 REVERSE LENGTH=338