barSeed - Barley Seed Development Database

Probe CUST_14524_PI390587928

Source Contig U35_13820

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14524_PI390587928	Hv_44K_v2	ACGAGTGGCATCTTTCCTAAAACTGACTATCCCTATCCACTGGTTGGTTATCCCTCAAAC	835	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370647	2183	2e-24	837 - 896	100	60 / 60	plus	ABC00262 ABC00398 ABC00501 ABC00927
MLOC	MLOC_33074.4	1679	2e-24	319 - 378	100	60 / 60	plus	ABC00262 ABC00398 ABC00501 ABC00927
MLOC	MLOC_33074.5	1669	2e-24	319 - 378	100	60 / 60	plus	ABC00262 ABC00398 ABC00501 ABC00927
JLOC1	JLOC1_21476.3	1975	8e-25	859 - 918	100	60 / 60	plus
JLOC1	JLOC1_21476.2	1985	8e-25	859 - 918	100	60 / 60	plus
Harvest21	ABC00927	1007	3e-25	836 - 895	100	60 / 60	plus	ABC00927
Harvest35	U35_13820	1007	3e-25	836 - 895	100	60 / 60	plus

Contig Sequence (1007 bp)

>U35_13820 1007 Hv_44K_v2
ACAACTCCCCTCTCGACAGAACAAGCGGCGGCAGCGACGGCGATTGGATCGAGCGCTAGG
ACGGCGATTCCGACGCAACGGAGCTTGGACGGGAGATAGTGGCCTAAGGGGAGACACTCT
TTTGCATCCTATCTGTTTGGAACTCTTCTGAAGGATTGTATCGGAGCTATTGATGGTACA
CATGTACGAGCCTCTGTAACAAAGGACATGGAGCCTTCCTTTCGTGGTAGAAAGATCCCT
ACAACTCAAAATGTGATGGCAGCCGTTGATTCTGATCTTCGGTTTACGTATGTATTGGCT
GGTTGGGAGGGGTCAGCACACGATGCGCTAGTCTTACATGATGCGTTAACCCGTCCAAAT
GGTCTTCGTGTACCATAAGGAAAATTTTATCTAGCTGATGCTGGATATGGAGCCAAGCCA
GGGTTCTTGCCCCCTTTTCGTGGAGTGAGATACCATTTGAATGAGTGGGGGAACAATCCT
CCTATAAATGAGAAGGAGTTGTTTAATCTTTGGCATTCTTCTCTTCGCACGACCGTAGAA
CGTGGATTTGGGTAATCTTACCACCTCAAACAAATTGGTGAGTGCAACAATCATCCCCTC
TTCAATCCTCTCAACCAAACACACAAATGGCTATCCCTAGTCACCTCTATCCTCCCTACC
AAACAAAATAATGCGGTTATCCAACTCATCTAATCCCTTGTAACCAAACAACAAAAAATG
GCTATCCCCAGCCACCTGGTATCCTCACCCGTGAACCAAACGCCACCTTAGCCAGCTTTT
GAAGGAATATTCCTAGGTATCTGTTTATCCCCACCCTACTTTACCATCAAACCAAACGAG
TGGCATCTTTCCTAAAACTGACTATCCCTATCCACTGGTTGGTTATCCCTCAAACCAAAC
ACCACCTAAATAGCGGGCCGGGACGAGGGTTCCTCTCTCATCCGCACGCTAACTCGTTGC
ACAAGAATTTCCTCCCACCCCCACCGTCTCGCCGCCGCCGCCGCCAG

Homology of Contig U35_13820 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g25160.1	377	2e-70	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi5g12265.1	248	3e-70
Arabidopsis v10	None