barSeed - Barley Seed Development Database

Probe CUST_14518_PI390587928

Source Contig U35_13826

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14518_PI390587928	Hv_44K_v2	ACTTTGAATCGTGGAAGTGTGATGTCTAGCCAATAAGATGAGAGGTCAAAACATAAAAAA	1205	GeneList: brown MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.119	2.886	1.464	0.702	0.147	0.292
Raw	155.559	350.018	148.888	121.544	8.187	17.715

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65477.1	1546	9e-22	72 - 126	100	55 / 55	minus	ABC01852 ABC01859 ABC01873
MLOC	MLOC_65477.2	1003	9e-22	41 - 95	100	55 / 55	minus	ABC01852 ABC01859 ABC01873
JLOC1	JLOC1_43092.2	1212	5e-22	100 - 154	100	55 / 55	minus
JLOC1	JLOC1_43092.1	1553	5e-22	130 - 184	100	55 / 55	minus
Harvest21	ABC01852	1354	2e-22	1198 - 1252	100	55 / 55	plus	ABC01852
Harvest35	U35_13826	1378	3e-25	1206 - 1265	100	60 / 60	plus

Contig Sequence (1378 bp)

>U35_13826 1378 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGTGCAAGCCACACGACCCTCCCTCAGTCCTAAGTAGCTAC
CTAGCTAGGTCCAGGTGCAAGAAGAAGCTCAGCTTCAGCAATGGCGTCCAGAGCAGCAGC
GGCCATCGCCGTCCTGGCCTTGGTCTGCGCCGCCGTCCACTCGTCGGAGGGCCAGCTGTC
ACCAAACTTCCACGCCGCCACGTGCCCGGACCTGGAGCGCATCGTGGAGTTCCACGTCGC
CGAGACGTTCCGGCGCGACGTGGGCGTGGCGCCGGCGCTCATCCGCATCCTCTTCCACGA
CTGCTTCCCGCAGGGCTGCGACGCCTCCGTGCTGCTCAAGGGCGCCGGCAGCGAGCTCAA
CGAGATCCCCAACCAGACGCTCCGCCCCGTGGCGCTCGACCTCATCGAGCGCATCCGCGC
TGCCGTGCACCGCGCATGCGGGCCCACCGTCTCCTGCGCCGACATCACCGTGCTCGCCAC
CCGCGACTCCCTCGTCAAGGCCGGCGGCCCCAGCTTCGACGTCGCCCTCGGCCGCCGCGA
CGGGCTCGCCCCGGCGTCGTCCGCACTCGTCGGCCTCCTGCCGGCGCCCTTCTTCGACGT
GCCCACCCTCATCTCCTCCTTCGCCAACCGGAGCCTCGACGTCGCCGACCTCGTGTCCCT
CTCCGGCGCCCACACCTTCGGCGTCGCCCACTGCCCGGCCTTCGAGGACCGGTTCAAGCC
GGTGTTCGACACCAACCCGGCCATCGACGGCAAGTTCGCCACGGCGCTGAGGAACAAGTG
CGCCGGGGACAACCCCGCCGGCACGCTGACCCAGAACCTCGACGTGCGCACGCCGGACGT
GTTCGACAACAAGTACTACTTCGACCTGATCGCGAGGCAGGGGCTGTTCAAGTCGGACCA
GGGCCTGATCGACCACCCGACCACCAAGCGCATGGCCACACGCTTCTCCCTCCACCAGGG
CGCTTTCTTCGAGCAGTTCGCGAGGTCCATGACCAAGATGAGCAACATGGACATTCTCAC
CGGCACCAAGGGCGAGATCCGGAACAACTGCGCCGTCCCCAACAGGCGTGTCCAGGACAT
CGAGACCGCCGTCGCCGGCGACGAGGGGATCGCCGCTGACATGTGAGAGATATATAACCA
ATCGGTGTAACGTAGTAGTACTGTGTGACTGTGTGAGTGGCCGTTAAGTAGTCTATGTGT
TTTAAACTTTGAATCGTGGAAGTGTGATGTCTAGCCAATAAGATGAGAGGTCAAAACATA
AAAAAAAAAAAAAAGTGCGAGAGAGATCGTAAAGTTTGACTGGATCCACTTTATTTTCTC
AAAAAAAAAAGAATTTAATTAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13826 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59150.1	347	6e-142	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g27130.1	343	9e-161
Arabidopsis v10	AT1G71695.1	358	1e-91	Peroxidase superfamily protein \| chr1:26964359-26966557 FORWARD LENGTH=358