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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_14517_PI390587928Hv_44K_v2TGTTCGACAACAGTACTACTTCGACCTGATCGCGAGGCAGGGGCTGTTCAAGTCGGACCA574GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.9462.3271.9880.8620.6760.602
Raw 19.14837.81027.52317.8393.5103.321



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_65477.115467e-23432 - 4929860 / 61minus ABC01852 ABC01859 ABC01873
MLOCMLOC_65477.210037e-23401 - 4619860 / 61minus ABC01852 ABC01859 ABC01873
JLOC1JLOC1_43092.212124e-23460 - 5209860 / 61minus
JLOC1JLOC1_43092.115534e-23490 - 5509860 / 61minus
Harvest21ABC018556663e-25540 - 59910060 / 60plus
Harvest21ABC0185213541e-23832 - 8929860 / 61plusABC01852
Harvest35U35_138277013e-25575 - 63410060 / 60plus
Harvest35U35_1382613781e-23840 - 9009860 / 61plus



Contig Sequence (701 bp)

>U35_13827 701 Hv_44K_v2
TCGAGCACTGTTGGCCCTGGGCAAGCCACACGACCCTCCCTCAGTCCTAAGTAGCTACCT
AGCTAGGTCCAGGTGCAAGAAGAAGCTCAGCTTCAGCAATGGCGTCCAGAGCAGCAGCGG
CCATCGCCGTCCTGGCCTTGGTCTGCGCCGCCGTCCACTCGTCGGAGGGCCAGCTGTCAC
CAAACTTCCACGCCGCCACGTGCCCGGACCTGGAGCGCATCGTGGAGTTCCACGTCGCCG
AGACGTTCCGGCGCGACGTGGGCGTGGCGCCGGCGCTCATCCGCATCCTCTTCCACGACT
GCTTCCCGCAGGGCTGCGGCGCCCTTCTTCGACGTGCCCACCCTCATCTCCTCCTTCGCC
AACCGGAGCCTCGACGTCGCCGACCTCGTGTCCCTCTCCGGCGCCCACACCTTCGGCGTC
GCCCACTGCCCGGCCTTCGAGGACCGGTTCAAGCCGGTGTTCGACACCAACCCGGCCATC
GACGGCAAGTTCGCCACGGCGCTGAGGAACAAGTGCGCCGGGGACAACCCCGCCGGCACG
CTGACCCAGAACCTCGACGTGCGCACGCCGGACGTGTTCGACAACAGTACTACTTCGACC
TGATCGCGAGGCAGGGGCTGTTCAAGTCGGACCAGGGCCTGATCGACCACCCGACCACCA
AGCGCATGGCCACCCGCTTCTCCCTCAACCAGGGCGCTTTC



Homology of Contig U35_13827 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None